Nanopublications

@prefix this: <http://purl.org/np/RA0dc_S7qxLQ3vt1gDRuQRPbM7MltsfKFWfHUduzswapE> .
@prefix sub: <http://purl.org/np/RA0dc_S7qxLQ3vt1gDRuQRPbM7MltsfKFWfHUduzswapE#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .

sub:Head {
  this: np:hasAssertion sub:assertion ;
    np:hasProvenance sub:provenance ;
    np:hasPublicationInfo sub:pubinfo ;
    a np:Nanopublication .
}

sub:assertion {
  <http://example.org/lifecyclestage> rdfs:label "refers to the life cycle stage (of organisms of the given taxon)" .
  <http://purl.obolibrary.org/obo/RO_0002303> rdfs:label "has habitat" .
  sub:assertion dct:description """<p><strong>This just a preliminary template for testing...</strong></p>

<p>It uses Biolink for the overall structure.</p>

<p>The subject is a taxon as extracted from Checklistbank.</p>

<p>The life cyle stage is from Uberon.</p>

<p>The predicate is from the Relation Ontology.</p>

<p>The object is a habitat according to the ENVO ontology.</p>""" ;
    a nt:AssertionTemplate ;
    rdfs:label "Linking a taxon to a habitat (Biolink/nidx/Uberon/RO/Checklistbank version)" ;
    nt:hasStatement sub:st0 , sub:st1 , sub:st2 , sub:st3 , sub:st4 ;
    nt:hasTag "Biodiversity" .
  sub:association a nt:IntroducedResource , nt:LocalResource ;
    rdfs:label "this association" .
  sub:habitat a nt:GuidedChoicePlaceholder ;
    rdfs:label "habitat/environment related to taxon" ;
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=envo&fieldList=iri,label,description&q=" .
  sub:lifecyclestage a nt:GuidedChoicePlaceholder ;
    rdfs:label "identifier of the life cycle stage" ;
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=uberon&fieldList=iri,label,description&childrenOf=http://purl.obolibrary.org/obo/UBERON_0000105&q=" .
  sub:relation a nt:GuidedChoicePlaceholder ;
    rdfs:label "identifier of relation" ;
    nt:possibleValue <http://purl.obolibrary.org/obo/RO_0002303> ;
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" .
  sub:st0 rdf:object <https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation> ;
    rdf:predicate rdf:type ;
    rdf:subject sub:association .
  sub:st1 rdf:object sub:taxon ;
    rdf:predicate <https://w3id.org/biolink/vocab/subject> ;
    rdf:subject sub:association .
  sub:st2 rdf:object sub:lifecyclestage ;
    rdf:predicate <http://example.org/lifecyclestage> ;
    rdf:subject sub:association ;
    a nt:OptionalStatement .
  sub:st3 rdf:object sub:relation ;
    rdf:predicate <https://w3id.org/biolink/vocab/predicate> ;
    rdf:subject sub:association .
  sub:st4 rdf:object sub:habitat ;
    rdf:predicate <https://w3id.org/biolink/vocab/object> ;
    rdf:subject sub:association .
  sub:taxon a nt:GuidedChoicePlaceholder ;
    rdfs:label "identifier of taxon" ;
    nt:possibleValuesFromApi "https://vodex.petapico.org/nidx/query?q=label:" .
  rdf:type rdfs:label "is a" .
  <https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation> rdfs:label "association of an organism taxon to an environment" .
  <https://w3id.org/biolink/vocab/object> rdfs:label "refers to the environment" .
  <https://w3id.org/biolink/vocab/predicate> rdfs:label "refers to the relation (between taxon and environment)" .
  <https://w3id.org/biolink/vocab/subject> rdfs:label "refers to the organism taxon" .
}

sub:provenance {
sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 .
}

sub:pubinfo {
  sub:sig npx:hasAlgorithm "RSA" ;
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCjDGQCS1S+SRnERDuYDXOugdYUP0efEquHJEEHAbU/uLzBVlga89zqrNPCS7fBE6lArBUWEmT8eLKdMapyqvAzI1J3jUWTMhDJF+XFBkUiuiFfNSc4vJJcmi0yujtnuzXsRIG202jyaP4f5ULoskFwaZOSBZJfiE0dsB3D7DTIAQIDAQAB" ;
    npx:hasSignature "XV9S6PQchKouyvJ2+yxMy2NDMzBB7/eAzxPmSArGaGX7oG9Y2aF8X1iYtZjWQ6WLBw/FUu8le9ok/5f8AaNc8Bcra/BJ7n5Nm504AUS2isiiBVGrIJ7dQqj6xwXpsTlD6mgpmvkj/Rxd6co79WfrtjtdPZUxTIKzASnjHuVf9uU=" ;
    npx:hasSignatureTarget this: .
  this: dct:created "2023-04-25T07:15:51.628Z"^^xsd:dateTime ;
    dct:creator orcid:0000-0002-1267-0234 ;
    npx:supersedes <http://purl.org/np/RA7omJ0WBIcZ-a4Alf_Ip3H4GiehInzJl_ev3B56hwoxo> ;
    nt:wasCreatedFromProvenanceTemplate <http://purl.org/np/RANwQa4ICWS5SOjw7gp99nBpXBasapwtZF1fIM3H2gYTM> ;
    nt:wasCreatedFromPubinfoTemplate <http://purl.org/np/RAA2MfqdBCzmz9yVWjKLXNbyfBNcwsMmOqcNUxkk1maIM> , <http://purl.org/np/RAjpBMlw3owYhJUBo3DtsuDlXsNAJ8cnGeWAutDVjuAuI> ;
    nt:wasCreatedFromTemplate <http://purl.org/np/RAkONP_jLqAbok3FgtutnKcLs4IHr9KiAuslQNnfEJIwY> .
}