sub:assertion {
sub:assertion dct:description """<p>Such a nanopublication expresses an association between two organism instances (subject and object), for example expressing that one subject individual ate the object individual.</p>
<p>For expressing interactions or more general knowledge between classes of organisms (taxa), please use the alternative template \"Associations between taxa\".</p>""" ;
a nt:AssertionTemplate ;
rdfs:label "Expressing an association between two organisms" ;
nt:hasDefaultProvenance <
http://purl.org/np/RA2VjRiJ5AsNnPHDXuOqvsEJwTwqtj5rBb-OFkpPOzd9s> ;
nt:hasNanopubLabelPattern "Organism of ${subjtaxonname} - ${relation} - organism of ${objtaxonname}" ;
nt:hasStatement sub:st00 ,
sub:st05 ,
sub:st09 ,
sub:st10 ,
sub:st11 ,
sub:st12 ,
sub:st20 ,
sub:st25 ,
sub:st30 ,
sub:st39 ,
sub:st40 ,
sub:st41 ,
sub:st42 ,
sub:st50 ,
sub:st55 ,
sub:st60 ,
sub:st81 ,
sub:st82 ,
sub:st90 ;
nt:hasTag "Biodiversity" .
sub:association a nt:IntroducedResource ,
nt:LocalResource ;
rdfs:label "this association" .
sub:comment a nt:LongLiteralPlaceholder ;
rdfs:label "short explanation related to the above statement" .
sub:coordinates a nt:LiteralPlaceholder ;
rdfs:label "lat/long coordinates in format like '+47.37+8.54' or with altitude '+47.37+8.54+410.5'" ;
nt:hasRegex "[+-][0-9]+(\\.[0-9]+)?[+-][0-9]+(\\.[0-9]+)?([+-][0-9]+(\\.[0-9]+)?)?" .
sub:obj a nt:LocalResource ;
rdfs:label "the object organism" .
sub:objAlt a nt:ExternalUriPlaceholder ;
rdfs:label "any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature)" .
sub:objlifecyclestage a nt:RestrictedChoicePlaceholder ;
rdfs:label "select the life cycle stage of the object organism; leave blank if unknown" ;
nt:possibleValuesFrom <
http://purl.org/np/RAVZS2MV-siFEqsgFTtgSoKA5qJkp7r1nM_n-MqPkvgdE> .
sub:objoccurrence a nt:ExternalUriPlaceholder ;
rdfs:label "occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc." .
sub:objtaxon a nt:LocalResource ;
rdfs:label "the object taxon concept" .
sub:objtaxondef a nt:ExternalUriPlaceholder ;
rdfs:label "taxon concept reference (https://doi.org/... or https://treatment.plazi.org/id/...)" ;
nt:hasRegex "(https://doi.org/|https://treatment.plazi.org/id/).+" .
sub:objtaxonname a nt:GuidedChoicePlaceholder ;
rdfs:label "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)" ;
nt:possibleValuesFromApi "https://vodex.petapico.org/nidx/query?rows=100&q=label:" .
sub:relation a nt:RestrictedChoicePlaceholder ;
rdfs:label "the relation between the two organisms" ;
nt:possibleValuesFrom <
http://purl.org/np/RAodaWZBY-yDEtl9reYazBfI-YVD5L4zPh8RrVFS0kbEo> .
sub:st00 rdf:object <
https://w3id.org/biolink/vocab/OrganismToOrganismAssociation> ;
rdf:predicate rdf:type ;
rdf:subject sub:association .
sub:st05 rdf:object sub:relation ;
rdf:predicate <
https://w3id.org/biolink/vocab/predicate> ;
rdf:subject sub:association .
sub:st09 rdf:object sub:subj ;
rdf:predicate <
https://w3id.org/biolink/vocab/subject> ;
rdf:subject sub:association .
sub:st10 rdf:object sub:subjtaxon ;
rdf:predicate rdf:type ;
rdf:subject sub:subj .
sub:st11 rdf:object sub:subjtaxonname ;
rdf:predicate <
https://w3id.org/kpxl/biodiv/terms/hasTaxonName> ;
rdf:subject sub:subjtaxon .
sub:st12 rdf:object sub:subjtaxondef ;
rdf:predicate <
https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition> ;
rdf:subject sub:subjtaxon ;
a nt:OptionalStatement .
sub:st20 rdf:object sub:subjlifecyclestage ;
rdf:predicate <
https://w3id.org/kpxl/biodiv/terms/hasCycleStage> ;
rdf:subject sub:subj ;
a nt:OptionalStatement .
sub:st25 rdf:object sub:subjoccurrence ;
rdf:predicate <
https://w3id.org/kpxl/biodiv/terms/hasOccurrence> ;
rdf:subject sub:subj ;
a nt:OptionalStatement .
sub:st30 rdf:object sub:subjAlt ;
rdf:predicate <
http://www.w3.org/2002/07/owl#sameAs> ;
rdf:subject sub:subj ;
a nt:OptionalStatement ,
nt:RepeatableStatement .
sub:st39 rdf:object sub:obj ;
rdf:predicate <
https://w3id.org/biolink/vocab/object> ;
rdf:subject sub:association .
sub:st40 rdf:object sub:objtaxon ;
rdf:predicate rdf:type ;
rdf:subject sub:obj .
sub:st41 rdf:object sub:objtaxonname ;
rdf:predicate <
https://w3id.org/kpxl/biodiv/terms/hasTaxonName> ;
rdf:subject sub:objtaxon .
sub:st42 rdf:object sub:objtaxondef ;
rdf:predicate <
https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition> ;
rdf:subject sub:objtaxon ;
a nt:OptionalStatement .
sub:st50 rdf:object sub:objlifecyclestage ;
rdf:predicate <
https://w3id.org/kpxl/biodiv/terms/hasCycleStage> ;
rdf:subject sub:obj ;
a nt:OptionalStatement .
sub:st55 rdf:object sub:objoccurrence ;
rdf:predicate <
https://w3id.org/kpxl/biodiv/terms/hasOccurrence> ;
rdf:subject sub:obj ;
a nt:OptionalStatement .
sub:st60 rdf:object sub:objAlt ;
rdf:predicate <
http://www.w3.org/2002/07/owl#sameAs> ;
rdf:subject sub:obj ;
a nt:OptionalStatement ,
nt:RepeatableStatement .
sub:st81 rdf:object sub:coordinates ;
rdf:predicate <
https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates> ;
rdf:subject sub:association ;
a nt:OptionalStatement .
sub:st82 rdf:object sub:timepoint ;
rdf:predicate <
https://w3id.org/biolink/vocab/timepoint> ;
rdf:subject sub:association ;
a nt:OptionalStatement .
sub:st90 rdf:object sub:comment ;
rdf:predicate rdfs:comment ;
rdf:subject nt:ASSERTION ;
a nt:OptionalStatement .
sub:subj a nt:LocalResource ;
rdfs:label "the subject organism" .
sub:subjAlt a nt:ExternalUriPlaceholder ;
rdfs:label "any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature)" .
sub:subjlifecyclestage a nt:RestrictedChoicePlaceholder ;
rdfs:label "select the life cycle stage of the subject organism; leave blank if unknown" ;
nt:possibleValuesFrom <
http://purl.org/np/RAVZS2MV-siFEqsgFTtgSoKA5qJkp7r1nM_n-MqPkvgdE> .
sub:subjoccurrence a nt:ExternalUriPlaceholder ;
rdfs:label "occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc." .
sub:subjtaxon a nt:LocalResource ;
rdfs:label "the subject taxon concept" .
sub:subjtaxondef a nt:ExternalUriPlaceholder ;
rdfs:label "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)" ;
nt:hasRegex "(https://doi.org/|https://treatment.plazi.org/id/).+" .
sub:subjtaxonname a nt:GuidedChoicePlaceholder ;
rdfs:label "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)" ;
nt:possibleValuesFromApi "https://vodex.petapico.org/nidx/query?rows=100&q=label:" .
sub:timepoint a nt:LiteralPlaceholder ;
rdfs:label "time expressed in XSD DateTime format, e.g. '2023-03-30T22:17:11Z'" ;
nt:hasRegex "-?([1-9]\\d\\d\\d+|0\\d\\d\\d)-(0[1-9]|1[0-2])-(0[1-9]|[12]\\d|3[01])T(([01]\\d|2[0-3]):[0-5]\\d:[0-5]\\d(\\.\\d+)?|24:00:00(\\.0+)?)(Z|[+-](0\\d|1[0-4]):[0-5]\\d)?" .
rdf:type rdfs:label "is an instance of" .
rdfs:comment rdfs:label "has the free-text comment" .
<
http://www.w3.org/2002/07/owl#sameAs>
rdfs:label "is the same as" .
<
https://w3id.org/biolink/vocab/OrganismToOrganismAssociation>
rdfs:label "an association between two individual organisms" .
<
https://w3id.org/biolink/vocab/object>
rdfs:label "refers to - links an association to its object" .
<
https://w3id.org/biolink/vocab/predicate>
rdfs:label "refers to the relation (between subject organism and object organism)" .
<
https://w3id.org/biolink/vocab/subject>
rdfs:label "refers to - links an association to its subject" .
<
https://w3id.org/biolink/vocab/timepoint>
rdfs:label "has the time stamp - points to the date and time associated with this relation or organisms (e.g. date of collection); if occurrence URI is given, this is redundant and does not need to be filled in" .
<
https://w3id.org/kpxl/biodiv/terms/hasCycleStage>
rdfs:label "has the life cycle stage" .
<
https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates>
rdfs:label "has the location coordinates - points to the location coordinates associated with this relation or organisms (e.g. place of collection); if occurrence URI is given, this is redundant and does not need to be filled in" .
<
https://w3id.org/kpxl/biodiv/terms/hasOccurrence>
rdfs:label "has the occurrence - links an organism to a record of a specific occurrence of it" .
<
https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition>
rdfs:label "is used as defined in" .
<
https://w3id.org/kpxl/biodiv/terms/hasTaxonName>
rdfs:label "has the name - links a taxon usage to a taxon name" .
}