Nanopublications

@prefix ns1: <http://purl.org/np/> .
@prefix this: <http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM> .
@prefix sub: <http://purl.org/np/RAE77nnUwGitaH8UolowIKxgGXUk2QVN8XnLcVy-RviTM#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .

sub:Head {
  this: np:hasAssertion sub:assertion ;
    np:hasProvenance sub:provenance ;
    np:hasPublicationInfo sub:pubinfo ;
    a np:Nanopublication .
}

sub:assertion {
  sub:assertion dct:description "<p>Such a nanopublication expresses an association between an organism taxon and a nucleotide sequence (that can correspond to a gene or subunit of a gene), for example expressing that Sequence ID (INSDC / Genbank accession number or BOLD Process ID) identifies a given taxon concept.</p>" ;
    a nt:AssertionTemplate ;
    rdfs:label "Expressing an association between a taxon and a nucleotide sequence" ;
    nt:hasDefaultProvenance ns1:RAYfEAP8KAu9qhBkCtyq_hshOvTAJOcdfIvGhiGwUqB-M ;
    nt:hasNanopubLabelPattern "${taxonname} - is identified by nucleotide sequence - ${nucleotidesequence}" ;
    nt:hasStatement sub:st00 , sub:st05 , sub:st09 , sub:st11 , sub:st12 , sub:st39 , sub:st90 ;
    nt:hasTag "Biodiversity" ;
    nt:hasTargetNanopubType <https://w3id.org/kpxl/biodiv/terms/BiodivNanopub> .
  sub:association a nt:IntroducedResource , nt:LocalResource ;
    rdfs:label "this association" .
  sub:comment a nt:LongLiteralPlaceholder ;
    rdfs:label "short explanation related to the above statement" .
  sub:nucleotidesequence a nt:ExternalUriPlaceholder ;
    rdfs:label "INSDC / Genbank accession number (e.g. https://www.ncbi.nlm.nih.gov/nuccore/...)" .
  sub:st00 rdf:object <https://w3id.org/kpxl/biodiv/terms/OrganismTaxonToNucleotideSequenceAssociation> ;
    rdf:predicate rdf:type ;
    rdf:subject sub:association .
  sub:st05 rdf:object <https://w3id.org/kpxl/biodiv/terms/isIdentifiedByNuceotideSequence> ;
    rdf:predicate <https://w3id.org/biolink/vocab/predicate> ;
    rdf:subject sub:association .
  sub:st09 rdf:object sub:taxon ;
    rdf:predicate <https://w3id.org/biolink/vocab/subject> ;
    rdf:subject sub:association .
  sub:st11 rdf:object sub:taxonname ;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasTaxonName> ;
    rdf:subject sub:taxon .
  sub:st12 rdf:object sub:taxondef ;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition> ;
    rdf:subject sub:taxon ;
    a nt:OptionalStatement .
  sub:st39 rdf:object sub:nucleotidesequence ;
    rdf:predicate <https://w3id.org/biolink/vocab/object> ;
    rdf:subject sub:association .
  sub:st90 rdf:object sub:comment ;
    rdf:predicate rdfs:comment ;
    rdf:subject nt:ASSERTION ;
    a nt:OptionalStatement .
  sub:taxon a nt:LocalResource ;
    rdfs:label "the taxon concept" .
  sub:taxondef a nt:ExternalUriPlaceholder ;
    rdfs:label "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)" ;
    nt:hasRegex "(https://doi.org/|https://treatment.plazi.org/id/).+" .
  sub:taxonname a nt:GuidedChoicePlaceholder ;
    rdfs:label "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)" ;
    nt:possibleValuesFromApi "https://vodex.petapico.org/nidx/query?rows=100&q=label:" .
  rdf:type rdfs:label "is an instance of" .
  rdfs:comment rdfs:label "has the free-text comment" .
  <https://w3id.org/biolink/vocab/object> rdfs:label "links the organism to the nucleotide sequence" .
  <https://w3id.org/biolink/vocab/predicate> rdfs:label "refers to the relation" .
  <https://w3id.org/biolink/vocab/subject> rdfs:label "refers to" .
  <https://w3id.org/kpxl/biodiv/terms/OrganismTaxonToNucleotideSequenceAssociation> rdfs:label "association of a taxon to a nucleotide sequence" .
  <https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition> rdfs:label "is used as defined in" .
  <https://w3id.org/kpxl/biodiv/terms/hasTaxonName> rdfs:label "has the name - links a taxon usage to a taxon name" .
  <https://w3id.org/kpxl/biodiv/terms/isIdentifiedByNuceotideSequence> rdfs:label "'is identified by nucleotide sequence'" .
}

sub:provenance {
sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 .
}

sub:pubinfo {
  sub:sig npx:hasAlgorithm "RSA" ;
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCjDGQCS1S+SRnERDuYDXOugdYUP0efEquHJEEHAbU/uLzBVlga89zqrNPCS7fBE6lArBUWEmT8eLKdMapyqvAzI1J3jUWTMhDJF+XFBkUiuiFfNSc4vJJcmi0yujtnuzXsRIG202jyaP4f5ULoskFwaZOSBZJfiE0dsB3D7DTIAQIDAQAB" ;
    npx:hasSignature "nzwTm/xtzFkXxFF4ikv0Z0BKaWX3VUj6YcWguhFTPGUyk1q/bhczgThBdYjJQumPmMR1CL26ID3e6f8Ro/fSXo3Fh5nwZeM+Dvertin0LS5AffGz5xgrvUFInSo3w+In9bukuzq+uzFq2BAYrBClATj8m3I22f3gEsEW/AKkfbA=" ;
    npx:hasSignatureTarget this: .
  this: dct:created "2023-08-25T07:56:39.197Z"^^xsd:dateTime ;
    dct:creator orcid:0000-0002-1267-0234 ;
    dct:license <https://creativecommons.org/licenses/by/4.0/> ;
    npx:supersedes ns1:RAAcvfFgDFl4Q-MSH3XEMjUxipfgY6SyjS9MfwPTP7NuY ;
    rdfs:label "Template: Expressing an association between a taxon and a nucleotide sequence" ;
    nt:wasCreatedFromProvenanceTemplate ns1:RANwQa4ICWS5SOjw7gp99nBpXBasapwtZF1fIM3H2gYTM ;
    nt:wasCreatedFromPubinfoTemplate ns1:RAA2MfqdBCzmz9yVWjKLXNbyfBNcwsMmOqcNUxkk1maIM , ns1:RAh1gm83JiG5M6kDxXhaYT1l49nCzyrckMvTzcPn-iv90 , ns1:RAjpBMlw3owYhJUBo3DtsuDlXsNAJ8cnGeWAutDVjuAuI ;
    nt:wasCreatedFromTemplate ns1:RAJwu5sVubRqXY4t2gkSoGxWkMyZqnpkGTCPiTlmvi4so .
}