. . . . . . . . " " . . "./" . . . . . . . "2022-08-05T01:51:49.692Z" . "2022-08-05T01:51:49.692Z" . "Rhometa includes various models to perform population recombination rate estimation on metagenomic datasets. It is primarily built using nextflow, a workflow management tool and the python programming language. Here a repository of all the results generated for Rhometa and the scripts used is provided.\n\nIn some cases, different pipelines were used during the course of developing rhometa such as our nextflow LDhat pipeline. LDHat is a population recombination rate estimation program for aligned sequences and simulation pipelines etc, all relevant scripts and nextflow works are included where applicable. The github repositories for all pipelines are provided in the accompanying manuscript.\n\nFile names starting with “figure” are all related to the evaluation of different forms of simulated data. The simulated files are not included to save space, but the scripts used to generate the files are and final results are included.\n\nThe file Lookup_tables.zip is related to all the lookup tables used during the analysis. Lookup tables themselves are very large and as such are not included, but all relevant scripts used to generate them are.\n\nThe file s_pneumoniae.zip is related to the analysis of a real dataset involving an S. pneumoniae transformation experiment. Experiment accession codes are included but not bam files and the reference. The details of how the BAM was generated and the reference file used are described in the manuscript. All results and scripts used are included." . . . . . . . . . "ce2f83c013a711edb084ed90e8a0b9fc" . . . "analysed data and scripts used" . . . . "Rhometa manuscript supporting data" . . "2022" . "2022" . . . . "This is the UTS Research Data Portal. For any questions, please get in touch with us at eResearch-it@uts.edu.au" . . "UTS Research Data Portal" . . . "Oni ocfl tools" . "git+https://github.com/Arkisto-Platform/oni-ocfl.git" . . . . "Aaron.Darling@uts.edu.au" . "Darling" . "Aaron" . "Aaron.Darling@uts.edu.au" . "Aaron Darling" . . . "Dominik.Beck@uts.edu.au" . "Beck" . "Dominik" . "Dominik.Beck@uts.edu.au" . "Dominik Beck" . . . "Justin.Seymour@uts.edu.au" . "Seymour" . "Justin" . "Justin.Seymour@uts.edu.au" . "Justin Seymour" . . "application/zip" . "Lookup_tables.zip" . . . "Martin.Ostrowski@uts.edu.au" . "Ostrowski" . "Martin" . "Martin.Ostrowski@uts.edu.au" . "Martin Ostrowski" . . . "Matthew.DeMaere@uts.edu.au" . "DeMaere" . "Matthew" . "Matthew.DeMaere@uts.edu.au" . "Matthew DeMaere" . . "application/zip" . "figure_1.zip" . . "application/zip" . "figure_2and3.zip" . . "application/zip" . "figure_S1.zip" . . "application/zip" . "figure_S2.zip" . . "application/zip" . "figure_S3.zip" . . "application/zip" . "figure_S4.zip" . . . "Data record created" . "2022-08-05T01:51:49.692Z" . "Create" . . . . "2022-08-05T01:51:49.692Z" . "Publish" . . . . "Created RO-Crate using oni-ocfl" . . . . . "ro-crate-metadata.json" . . . "ro-crate-metadata.jsonld" . . "application/zip" . "s_pnemoniae.zip" . . . "_:contact/sidaswar.krishnan-1@student.uts.edu.au" . "sidaswar.krishnan-1@student.uts.edu.au" . "Krishnan" . "Sidaswar" . "sidaswar.krishnan-1@student.uts.edu.au" . "Sidaswar Krishnan" . . "simon.kruik@uts.edu.au" . "" . . "https://doi.org/10.26195/0w2e-tt98" . "10.26195/0w2e-tt98" . . "_:FOR/08" . "08 - INFORMATION AND COMPUTING SCIENCES" . "_:FOR/08" . . "_:FOR/06" . "06 - BIOLOGICAL SCIENCES" . "_:FOR/06" . . "Data Manager" . "sidaswar.krishnan-1@student.uts.edu.au" . "_:contact/sidaswar.krishnan-1@student.uts.edu.au" . "" . . "public_ocfl" . "ce2f83c013a711edb084ed90e8a0b9fc" . . "repository" . "arcp://name,uts_public_data_repo/ce2f83c013a711edb084ed90e8a0b9fc" . . "http://creativecommons.org/licenses/by-sa/4.0" . "http://creativecommons.org/licenses/by-sa/4.0" . . "You are free to share (copy and redistribute the material in any medium or format) and adapt (remix, transform and build upon the material for any purpose, even commercially)." . "Attribution 4.0 International (CC BY 4.0)" . . "https://www.biorxiv.org/content/10.1101/2022.08.04.502887v1" . "Rhometa: Population recombination rate estimation from metagenomic read datasets" . . "ZIP Format" . . "https://www.uts.edu.au/" . "University of Technology Sydney" . . . "2025-07-18T14:16:56.792+02:00"^^ . . "RSA" . "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEApbztY8l4lWqVF8L/djJ1knoc7Nm5kVHT9NqSe0fXO9Hel3DRO2IyxJYVEvThhllBuHNtZK32ww23AlglArokhxPCSBPKvVgQS6r46khF2D85tnd5htaBq+bfjMqL+LDlQh3LdBpAqrLmsmfsPkU65CCxSGufBs2v39p41z5FkRXE1JKJ/UZe+1OUq+CibjOfo1g1Nz6HO0fZML7GnQBj5X9lvU0llmDk/sqdNMxAJDSQh2/Zh0kz7+Dm7vJOx3mNEXU4FuzVzKBYwTotvEcJod7Vot1fPOJXPGoNDVNKMQffCala9o4pqT739LS7R7ZFVMjzPkLUxYCjnEgOZI5t6wIDAQAB" . 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