@prefix ns1: <http://purl.org/np/> .
@prefix this: <http://purl.org/np/RASbSF0U5nWbXwDg7HBKX3ueJmN5rwUeZTNKmPZyltwPw> .
@prefix sub: <http://purl.org/np/RASbSF0U5nWbXwDg7HBKX3ueJmN5rwUeZTNKmPZyltwPw#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .

sub:Head {
  this: np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo;
    a np:Nanopublication .
}

sub:assertion {
  <http://purl.obolibrary.org/obo/RO_0002303> rdfs:label "has habitat" .
  
  sub:assertion dct:description "Such a nanopublication expresses an association between an organism taxon (e.g. a species) and an environment, for example expressing that the organisms of the given species inhabit the specified environment.";
    a nt:AssertionTemplate;
    rdfs:label "Expressing an association between an organism taxon and an environment";
    nt:hasDefaultProvenance ns1:RA2VjRiJ5AsNnPHDXuOqvsEJwTwqtj5rBb-OFkpPOzd9s;
    nt:hasNanopubLabelPattern "${taxonname} - ${relation} - ${environment}";
    nt:hasStatement sub:st00, sub:st05, sub:st10, sub:st11, sub:st12, sub:st20, sub:st40,
      sub:st60;
    nt:hasTag "Biodiversity";
    nt:hasTargetNanopubType <https://w3id.org/kpxl/biodiv/terms/BiodivNanopub> .
  
  sub:association a nt:IntroducedResource, nt:LocalResource;
    rdfs:label "this association" .
  
  sub:comment a nt:LongLiteralPlaceholder;
    rdfs:label "short explanation related to the above statement" .
  
  sub:environment a nt:GuidedChoicePlaceholder;
    rdfs:label "the environment to be associated with the taxon";
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=envo&fieldList=iri,label,description&q=" .
  
  sub:lifecyclestage a nt:RestrictedChoicePlaceholder;
    rdfs:label "the life cycle stage";
    nt:possibleValuesFrom ns1:RAVZS2MV-siFEqsgFTtgSoKA5qJkp7r1nM_n-MqPkvgdE .
  
  sub:relation a nt:GuidedChoicePlaceholder;
    rdfs:label "the type of relation between the taxon and the environment";
    nt:possibleValue <http://purl.obolibrary.org/obo/RO_0002303>;
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" .
  
  sub:st00 rdf:object <https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation>;
    rdf:predicate rdf:type;
    rdf:subject sub:association .
  
  sub:st05 rdf:object sub:relation;
    rdf:predicate <https://w3id.org/biolink/vocab/predicate>;
    rdf:subject sub:association .
  
  sub:st10 rdf:object sub:taxon;
    rdf:predicate <https://w3id.org/biolink/vocab/subject>;
    rdf:subject sub:association .
  
  sub:st11 rdf:object sub:taxonname;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasTaxonName>;
    rdf:subject sub:taxon .
  
  sub:st12 rdf:object sub:taxondef;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition>;
    rdf:subject sub:taxon;
    a nt:OptionalStatement .
  
  sub:st20 rdf:object sub:lifecyclestage;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasSubjectLifeCycleStage>;
    rdf:subject sub:association;
    a nt:OptionalStatement .
  
  sub:st40 rdf:object sub:environment;
    rdf:predicate <https://w3id.org/biolink/vocab/object>;
    rdf:subject sub:association .
  
  sub:st60 rdf:object sub:comment;
    rdf:predicate rdfs:comment;
    rdf:subject sub:association;
    a nt:OptionalStatement .
  
  sub:taxon a nt:LocalResource;
    rdfs:label "the taxon concept" .
  
  sub:taxondef a nt:ExternalUriPlaceholder;
    rdfs:label "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)";
    nt:hasRegex "(https://doi.org/|https://treatment.plazi.org/id/).+" .
  
  sub:taxonname a nt:GuidedChoicePlaceholder;
    rdfs:label "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)";
    nt:possibleValuesFromApi "https://vodex.petapico.org/nidx/query?rows=100&q=label:" .
  
  rdf:type rdfs:label "is a" .
  
  rdfs:comment rdfs:label "has the free-text comment" .
  
  <https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation> rdfs:label
      "association of an organism taxon to an environment" .
  
  <https://w3id.org/biolink/vocab/object> rdfs:label "links the taxon to the environment" .
  
  <https://w3id.org/biolink/vocab/predicate> rdfs:label "refers to the relation (between taxon and environment)" .
  
  <https://w3id.org/biolink/vocab/subject> rdfs:label "refers to" .
  
  <https://w3id.org/kpxl/biodiv/terms/hasSubjectLifeCycleStage> rdfs:label "refers to the taxon's life cycle stage" .
  
  <https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition> rdfs:label "is used as defined in" .
  
  <https://w3id.org/kpxl/biodiv/terms/hasTaxonName> rdfs:label "has the name - links a taxon usage to a taxon name" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 .
}

sub:pubinfo {
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCjDGQCS1S+SRnERDuYDXOugdYUP0efEquHJEEHAbU/uLzBVlga89zqrNPCS7fBE6lArBUWEmT8eLKdMapyqvAzI1J3jUWTMhDJF+XFBkUiuiFfNSc4vJJcmi0yujtnuzXsRIG202jyaP4f5ULoskFwaZOSBZJfiE0dsB3D7DTIAQIDAQAB";
    npx:hasSignature "CPeDfC08vdi8B/KimAIm+dOSq/5lGcTGpKz1QxGmcCMNnJnZN7EbjZGhpnqPCCcsfloU2bqz7+sptTQQpmgvTKaBVGu0WVC6kUCV2cSQo7630IeNW9cBMRSmi/MxF4G0T4GmaJ9sU0WzmcsqcMF65gSQfpxRvM77lmNoa/4PjSk=";
    npx:hasSignatureTarget this: .
  
  this: dct:created "2023-08-23T10:30:34.918Z"^^xsd:dateTime;
    dct:creator orcid:0000-0002-1267-0234;
    dct:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:supersedes ns1:RA-k8dm_PFY50HzfUrl5p7kXbyGLCMWvfm0i_kpxYoZus;
    rdfs:label "Template: Expressing an association between an organism t...";
    nt:wasCreatedFromProvenanceTemplate ns1:RANwQa4ICWS5SOjw7gp99nBpXBasapwtZF1fIM3H2gYTM;
    nt:wasCreatedFromPubinfoTemplate ns1:RAA2MfqdBCzmz9yVWjKLXNbyfBNcwsMmOqcNUxkk1maIM,
      ns1:RAh1gm83JiG5M6kDxXhaYT1l49nCzyrckMvTzcPn-iv90, ns1:RAjpBMlw3owYhJUBo3DtsuDlXsNAJ8cnGeWAutDVjuAuI;
    nt:wasCreatedFromTemplate ns1:RANjqEfLnGSzLuq0heRSXN0psYWW0oX4v3W8w7osb3xfs .
}