Nanopublications

@prefix this: <http://purl.org/np/RAl6ML-bkelnW2pIvy4r9ftFBOjtWUfCLQvQWG4UTukC4> .
@prefix sub: <http://purl.org/np/RAl6ML-bkelnW2pIvy4r9ftFBOjtWUfCLQvQWG4UTukC4#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .

sub:Head {
  this: np:hasAssertion sub:assertion ;
    np:hasProvenance sub:provenance ;
    np:hasPublicationInfo sub:pubinfo ;
    a np:Nanopublication .
}

sub:assertion {
  <http://purl.obolibrary.org/obo/RO_0001019> rdfs:label "contains" .
  sub:assertion dct:description "Such a nanopublication expresses an association between an organism taxon (e.g. a species) and a gene." ;
    a nt:AssertionTemplate ;
    rdfs:label "Expressing an association between an organism taxon and a gene" ;
    nt:hasStatement sub:st0 , sub:st1 , sub:st2 , sub:st3 , sub:st4 ;
    nt:hasTag "Biodiversity" .
  sub:association a nt:IntroducedResource , nt:LocalResource ;
    rdfs:label "this association" .
  sub:gene a nt:GuidedChoicePlaceholder ;
    rdfs:label "the gene to be associated with the taxon" ;
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ogg&fieldList=iri,label,description&q=" .
  sub:lifecyclestage a nt:GuidedChoicePlaceholder ;
    rdfs:label "the life cycle stage" ;
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=uberon&fieldList=iri,label,description&childrenOf=http://purl.obolibrary.org/obo/UBERON_0000105&q=" .
  sub:relation a nt:GuidedChoicePlaceholder ;
    rdfs:label "the type of relation between the taxon and the gene" ;
    nt:possibleValue <http://purl.obolibrary.org/obo/RO_0001019> ;
    nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" .
  sub:st0 rdf:object <https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation> ;
    rdf:predicate rdf:type ;
    rdf:subject sub:association .
  sub:st1 rdf:object sub:taxon ;
    rdf:predicate <https://w3id.org/biolink/vocab/subject> ;
    rdf:subject sub:association .
  sub:st2 rdf:object sub:lifecyclestage ;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasSubjectLifeCycleStage> ;
    rdf:subject sub:association ;
    a nt:OptionalStatement .
  sub:st3 rdf:object sub:relation ;
    rdf:predicate <https://w3id.org/biolink/vocab/predicate> ;
    rdf:subject sub:association .
  sub:st4 rdf:object sub:gene ;
    rdf:predicate <https://w3id.org/biolink/vocab/object> ;
    rdf:subject sub:association .
  sub:taxon a nt:GuidedChoicePlaceholder ;
    rdfs:label "the organism taxon, e.g. a species" ;
    nt:possibleValuesFromApi "https://vodex.petapico.org/nidx/query?rows=100&q=label:" .
  rdf:type rdfs:label "is a" .
  <https://w3id.org/biolink/vocab/OrganismTaxonToEnvironmentAssociation> rdfs:label "association of an organism taxon to an environment" .
  <https://w3id.org/biolink/vocab/object> rdfs:label "refers to the gene" .
  <https://w3id.org/biolink/vocab/predicate> rdfs:label "refers to the relation (between taxon and gene)" .
  <https://w3id.org/biolink/vocab/subject> rdfs:label "refers to the organism taxon" .
  <https://w3id.org/kpxl/biodiv/terms/hasSubjectLifeCycleStage> rdfs:label "refers to the taxon's life cycle stage" .
}

sub:provenance {
sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 .
}

sub:pubinfo {
  sub:sig npx:hasAlgorithm "RSA" ;
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCjDGQCS1S+SRnERDuYDXOugdYUP0efEquHJEEHAbU/uLzBVlga89zqrNPCS7fBE6lArBUWEmT8eLKdMapyqvAzI1J3jUWTMhDJF+XFBkUiuiFfNSc4vJJcmi0yujtnuzXsRIG202jyaP4f5ULoskFwaZOSBZJfiE0dsB3D7DTIAQIDAQAB" ;
    npx:hasSignature "S90R8pC7Dr2Wq0JWbUndte2gy17egnk33Ywo82GqQEOps/UUE6TVzDNzbXxxLdIlijLN48KlRtmgKyngcq+Nj1Ue46wMlGOzdOhDiVV/0ftwmxEvwuDyTTVI/vsRxzScopbwJ3t8Pi49x6ecJsNBt5/aGTQov8q58zPcnMsanbU=" ;
    npx:hasSignatureTarget this: .
  this: dct:created "2023-05-16T13:26:56.556Z"^^xsd:dateTime ;
    dct:creator orcid:0000-0002-1267-0234 ;
    nt:wasCreatedFromProvenanceTemplate <http://purl.org/np/RANwQa4ICWS5SOjw7gp99nBpXBasapwtZF1fIM3H2gYTM> ;
    nt:wasCreatedFromPubinfoTemplate <http://purl.org/np/RAA2MfqdBCzmz9yVWjKLXNbyfBNcwsMmOqcNUxkk1maIM> ;
    nt:wasCreatedFromTemplate <http://purl.org/np/RAkONP_jLqAbok3FgtutnKcLs4IHr9KiAuslQNnfEJIwY> .
}