sub:assertion {
sub:assertion dct:description """<p>This nanopublication makes a statement that in the context of a thing of a certain type (e.g. a mouse), another thing of a certain type (e.g. a gene) tends to have a relation (such as causing) to another thing of a certain type (e.g. a disease) in the same context.</p>
<p>Note that the context is <strong>not</strong> a reference to a general topic or field. It denotes the class for the context in which the relations happen. If each relation is happening in a human, for example, such as a certain condition leading to a certain symptom, then the context class should be 'human'.</p>
<p>The technical background of the super-pattern can be found in <a href=\"https://doi.org/10.1145/3460210.3493561\">this publication</a>.</p>
<p>This is the \"hypothesis\" version of the super-pattern template, where the qualifier is optional.</p>""" ;
a nt:AssertionTemplate ;
rdfs:label "Expressing a general hypothesis with a super-pattern" ;
nt:hasStatement sub:st0 ,
sub:st1 ,
sub:st2 ,
sub:st3 ,
sub:st4 ,
sub:st5 ,
sub:st6 ;
nt:hasTag "Claims" .
sub:contextClass a nt:GuidedChoicePlaceholder ;
rdfs:label "URI of the context class" ;
nt:possibleValue <
https://w3id.org/linkflows/superpattern/terms/UniversalContext> ;
nt:possibleValuesFromApi "http://purl.org/nanopub/api/find_signed_things?type=http%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23Class&searchterm=" , "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .
sub:label a nt:LiteralPlaceholder ;
rdfs:label "informal label or text for the whole superpattern instance" .
sub:objectClass a nt:GuidedChoicePlaceholder ;
rdfs:label "URI of the object class" ;
nt:possibleValuesFromApi "http://purl.org/nanopub/api/find_signed_things?type=http%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23Class&searchterm=" , "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .
sub:qualifier a nt:RestrictedChoicePlaceholder ;
rdfs:label "URI of the qualifier" ;
nt:possibleValue <
https://w3id.org/linkflows/superpattern/terms/alwaysQualifier> , <
https://w3id.org/linkflows/superpattern/terms/canAlwaysQualifier> , <
https://w3id.org/linkflows/superpattern/terms/canFrequentlyNotQualifier> , <
https://w3id.org/linkflows/superpattern/terms/canFrequentlyQualifier> , <
https://w3id.org/linkflows/superpattern/terms/canGenerallyNotQualifier> , <
https://w3id.org/linkflows/superpattern/terms/canGenerallyQualifier> , <
https://w3id.org/linkflows/superpattern/terms/canMostlyNotQualifier> , <
https://w3id.org/linkflows/superpattern/terms/canMostlyQualifier> , <
https://w3id.org/linkflows/superpattern/terms/canNeverQualifier> , <
https://w3id.org/linkflows/superpattern/terms/canSometimesNotQualifier> , <
https://w3id.org/linkflows/superpattern/terms/canSometimesQualifier> , <
https://w3id.org/linkflows/superpattern/terms/frequentlyNotQualifier> , <
https://w3id.org/linkflows/superpattern/terms/frequentlyQualifier> , <
https://w3id.org/linkflows/superpattern/terms/generallyNotQualifier> , <
https://w3id.org/linkflows/superpattern/terms/generallyQualifier> , <
https://w3id.org/linkflows/superpattern/terms/mostlyNotQualifier> , <
https://w3id.org/linkflows/superpattern/terms/mostlyQualifier> , <
https://w3id.org/linkflows/superpattern/terms/neverQualifier> , <
https://w3id.org/linkflows/superpattern/terms/sometimesNotQualifier> , <
https://w3id.org/linkflows/superpattern/terms/sometimesQualifier> .
sub:relation a nt:RestrictedChoicePlaceholder ;
rdfs:label "URI of the relation type" ;
nt:possibleValue <
https://w3id.org/linkflows/superpattern/terms/affects> , <
https://w3id.org/linkflows/superpattern/terms/causes> , <
https://w3id.org/linkflows/superpattern/terms/contributesTo> , <
https://w3id.org/linkflows/superpattern/terms/cooccursWith> , <
https://w3id.org/linkflows/superpattern/terms/decreases> , <
https://w3id.org/linkflows/superpattern/terms/enables> , <
https://w3id.org/linkflows/superpattern/terms/follows> , <
https://w3id.org/linkflows/superpattern/terms/hasDifferentValueFrom> , <
https://w3id.org/linkflows/superpattern/terms/hasLargerValueThan> , <
https://w3id.org/linkflows/superpattern/terms/hasSameValueAs> , <
https://w3id.org/linkflows/superpattern/terms/hasSimilarValueAs> , <
https://w3id.org/linkflows/superpattern/terms/hasSmallerValueThan> , <
https://w3id.org/linkflows/superpattern/terms/includes> , <
https://w3id.org/linkflows/superpattern/terms/increases> , <
https://w3id.org/linkflows/superpattern/terms/inhibits> , <
https://w3id.org/linkflows/superpattern/terms/isCausedBy> , <
https://w3id.org/linkflows/superpattern/terms/isFollowedBy> , <
https://w3id.org/linkflows/superpattern/terms/isIncludedIn> , <
https://w3id.org/linkflows/superpattern/terms/isNecessaryAndSufficientFor> , <
https://w3id.org/linkflows/superpattern/terms/isSameAs> , <
https://w3id.org/linkflows/superpattern/terms/prevents> , <
https://w3id.org/linkflows/superpattern/terms/requires> .
sub:spi a nt:IntroducedResource ,
nt:LocalResource ;
rdfs:label "SPI: - this super-pattern instance" .
sub:st0 rdf:object <
https://w3id.org/linkflows/superpattern/terms/SuperPatternInstance> ;
rdf:predicate rdf:type ;
rdf:subject sub:spi .
sub:st1 rdf:object sub:label ;
rdf:predicate rdfs:label ;
rdf:subject sub:spi .
sub:st2 rdf:object sub:contextClass ;
rdf:predicate <
https://w3id.org/linkflows/superpattern/terms/hasContextClass> ;
rdf:subject sub:spi .
sub:st3 rdf:object sub:subjectClass ;
rdf:predicate <
https://w3id.org/linkflows/superpattern/terms/hasSubjectClass> ;
rdf:subject sub:spi .
sub:st4 rdf:object sub:qualifier ;
rdf:predicate <
https://w3id.org/linkflows/superpattern/terms/hasQualifier> ;
rdf:subject sub:spi ;
a nt:OptionalStatement .
sub:st5 rdf:object sub:relation ;
rdf:predicate <
https://w3id.org/linkflows/superpattern/terms/hasRelation> ;
rdf:subject sub:spi .
sub:st6 rdf:object sub:objectClass ;
rdf:predicate <
https://w3id.org/linkflows/superpattern/terms/hasObjectClass> ;
rdf:subject sub:spi .
sub:subjectClass a nt:GuidedChoicePlaceholder ;
rdfs:label "URI of the subject class" ;
nt:possibleValuesFromApi "http://purl.org/nanopub/api/find_signed_things?type=http%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23Class&searchterm=" , "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .
rdf:type rdfs:label "This is a - links a thing (left) to a class it belongs (right)" .
rdfs:label rdfs:label "Informally, it can be shown as - links a formal identifier (left) to a human-readable name (right)" .
<
https://w3id.org/linkflows/superpattern/terms/SuperPatternInstance>
rdfs:label "super-pattern instance - a statement that conforms to the super-pattern" .
<
https://w3id.org/linkflows/superpattern/terms/UniversalContext>
rdfs:label "universal context (i.e. no context restriction) - The universal context is used in a super-pattern when the subject and object instances of a super-pattern statement happen outside of any obvious context entities (such as the context of \"organism\" in the case of genes affecting diseases)" .
<
https://w3id.org/linkflows/superpattern/terms/affects>
rdfs:label "affects - the subject instance positively or negatively affects the intensity or frequency of the activity instance of the object" .
<
https://w3id.org/linkflows/superpattern/terms/alwaysQualifier>
rdfs:label "always - true in 100% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/canAlwaysQualifier>
rdfs:label "can always - can be made true in 100% cases" .
<
https://w3id.org/linkflows/superpattern/terms/canFrequentlyNotQualifier>
rdfs:label "can frequently not - can be made true in at most 90% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/canFrequentlyQualifier>
rdfs:label "can frequently - can be made true in at least 10% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/canGenerallyNotQualifier>
rdfs:label "can generally not - can be made true in at most 10% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/canGenerallyQualifier>
rdfs:label "can generally - can be made true in at least 90% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/canMostlyNotQualifier>
rdfs:label "can mostly not - can be made true in at most 50% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/canMostlyQualifier>
rdfs:label "can mostly - can be made true in at least 50% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/canNeverQualifier>
rdfs:label "can never - can be made true in 0% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/canSometimesNotQualifier>
rdfs:label "can sometimes not - can be made true in at most 99.9% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/canSometimesQualifier>
rdfs:label "can sometimes - can be made true in at least 0.1% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/causes>
rdfs:label "causes - the subject instance causes the existence of the object instance" .
<
https://w3id.org/linkflows/superpattern/terms/contributesTo>
rdfs:label "contributes to - the subject instance positively affects the intensity or frequency of the activity instance of the object" .
<
https://w3id.org/linkflows/superpattern/terms/cooccursWith>
rdfs:label "co-occurs with - the subject instance is close to the object instance in terms of space and time" .
<
https://w3id.org/linkflows/superpattern/terms/decreases>
rdfs:label "decreases - the subject instance causes the value of the object instance to decrease" .
<
https://w3id.org/linkflows/superpattern/terms/enables>
rdfs:label "enables - the subject instance causes the activity instance of the object to happen" .
<
https://w3id.org/linkflows/superpattern/terms/follows>
rdfs:label "follows - the object instance came into existence before the subject instance" .
<
https://w3id.org/linkflows/superpattern/terms/frequentlyNotQualifier>
rdfs:label "frequently not - true in at most 90% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/frequentlyQualifier>
rdfs:label "frequently - true in at least 10% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/generallyNotQualifier>
rdfs:label "generally not - true in at most 10% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/generallyQualifier>
rdfs:label "generally - true in at least 90% of the cases" .
<
https://w3id.org/linkflows/superpattern/terms/hasContextClass>
rdfs:label "In the context of all things of type - specifies the context class (right) for the given super-pattern instance (left)" .
<
https://w3id.org/linkflows/superpattern/terms/hasDifferentValueFrom>
rdfs:label "has different value from - the quantifiable subject instance has a value that is different from the quantifiable object instance" .
<
https://w3id.org/linkflows/superpattern/terms/hasLargerValueThan>
rdfs:label "has larger value than - the quantifiable subject instance has a larger value than the quantifiable object instance" .
<
https://w3id.org/linkflows/superpattern/terms/hasObjectClass>
rdfs:label "... to things of type - specifies the object class (right) for the given super-pattern instance (left)" .
<
https://w3id.org/linkflows/superpattern/terms/hasQualifier>
rdfs:label "... (qualifier) - specifies the qualifier (right) for the given super-pattern statement (left)" .
<
https://w3id.org/linkflows/superpattern/terms/hasRelation>
rdfs:label "... have a relation of type - specifies the relation type (right) for the given super-pattern statement (left)" .
<
https://w3id.org/linkflows/superpattern/terms/hasSameValueAs>
rdfs:label "has same value as - the quantifiable subject instance has the same value as the quantifiable object instance" .
<
https://w3id.org/linkflows/superpattern/terms/hasSimilarValueAs>
rdfs:label "has similar value as - the quantifiable subject instance has a similar value as the quantifiable object instance" .
<
https://w3id.org/linkflows/superpattern/terms/hasSmallerValueThan>
rdfs:label "has smaller value than - the quantifiable subject instance has a smaller value than the quantifiable object instance" .
<
https://w3id.org/linkflows/superpattern/terms/hasSubjectClass>
rdfs:label "... things of type - specifies the subject class (right) for the given super-pattern instance (left)" .
<
https://w3id.org/linkflows/superpattern/terms/includes>
rdfs:label "includes - the subject instance spatiotemporally includes the object instance" .
<
https://w3id.org/linkflows/superpattern/terms/increases>
rdfs:label "increases - the subject instance causes the value of the object instance to increase" .
<
https://w3id.org/linkflows/superpattern/terms/inhibits>
rdfs:label "inhibits - the subject instance negatively affects the intensity or frequency of the activity instance of the object" .
<
https://w3id.org/linkflows/superpattern/terms/isCausedBy>
rdfs:label "is caused by - the existence of the subject instance is caused by the object instance" .
<
https://w3id.org/linkflows/superpattern/terms/isFollowedBy>
rdfs:label "is followed by - the subject instance comes into existence before the object instance" .
<
https://w3id.org/linkflows/superpattern/terms/isIncludedIn>
rdfs:label "is included in - the object instance spatiotemporally includes the subject instance" .
<
https://w3id.org/linkflows/superpattern/terms/isNecessaryAndSufficientFor>
rdfs:label "is necessary and sufficient for - the subject instance causes the existence of the object instance, which would not come to exist if the subject did not exist" .
<
https://w3id.org/linkflows/superpattern/terms/isSameAs>
rdfs:label "is same as - the subject instance and the object instance are the same individual" .
<
https://w3id.org/linkflows/superpattern/terms/mostlyNotQualifier>
rdfs:label "mostly not - true in at most 50% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/mostlyQualifier>
rdfs:label "mostly - true in at least 50% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/neverQualifier>
rdfs:label "never - true in 0% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/prevents>
rdfs:label "prevents - the subject instance causes the activity instance of the object not to happen" .
<
https://w3id.org/linkflows/superpattern/terms/requires>
rdfs:label "requires - the subject instance would not come to exist if the object instance did not exist" .
<
https://w3id.org/linkflows/superpattern/terms/sometimesNotQualifier>
rdfs:label "sometimes not - true in at most 99.9% of cases" .
<
https://w3id.org/linkflows/superpattern/terms/sometimesQualifier>
rdfs:label "sometimes - true in at least 0.1% of cases" .
}