@prefix this: <http://purl.org/np/RAuMEJ02d8nri9gs9dPOP5L2orn49VrSHT1K5Pjumit1w> .
@prefix sub: <http://purl.org/np/RAuMEJ02d8nri9gs9dPOP5L2orn49VrSHT1K5Pjumit1w#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
sub:Head {
  this: np:hasAssertion sub:assertion ;
    np:hasProvenance sub:provenance ;
    np:hasPublicationInfo sub:pubinfo ;
    a np:Nanopublication .
}
sub:assertion {
  sub:assertion dct:description """<p>This nanopublication makes a statement that in the context of a thing of a certain type (e.g. a mouse), another thing of a certain type (e.g. a gene) tends to have a relation (such as causing) to another thing of a certain type (e.g. a disease) in the same context.</p>

<p>Note that the context is <strong>not</strong> a reference to a general topic or field. It denotes the class for the context in which the relations happen. If each relation is happening in a human, for example, such as a certain condition leading to a certain symptom, then the context class should be 'human'.</p>

<p>The technical background of the super-pattern can be found in <a href=\"https://doi.org/10.1145/3460210.3493561\">this publication</a>.</p>

<p>This is the \"hypothesis\" version of the super-pattern template, where the qualifier is optional.</p>""" ;
    a nt:AssertionTemplate ;
    rdfs:label "Expressing a general hypothesis with a super-pattern" ;
    nt:hasStatement sub:st0 , sub:st1 , sub:st2 , sub:st3 , sub:st4 , sub:st5 , sub:st6 ;
    nt:hasTag "Claims" .
  sub:contextClass a nt:GuidedChoicePlaceholder ;
    rdfs:label "URI of the context class" ;
    nt:possibleValue <https://w3id.org/linkflows/superpattern/terms/UniversalContext> ;
    nt:possibleValuesFromApi "http://purl.org/nanopub/api/find_signed_things?type=http%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23Class&searchterm=" , "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .
  sub:label a nt:LiteralPlaceholder ;
    rdfs:label "informal label or text for the whole superpattern instance" .
  sub:objectClass a nt:GuidedChoicePlaceholder ;
    rdfs:label "URI of the object class" ;
    nt:possibleValuesFromApi "http://purl.org/nanopub/api/find_signed_things?type=http%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23Class&searchterm=" , "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .
  sub:qualifier a nt:RestrictedChoicePlaceholder ;
    rdfs:label "URI of the qualifier" ;
    nt:possibleValue <https://w3id.org/linkflows/superpattern/terms/alwaysQualifier> , <https://w3id.org/linkflows/superpattern/terms/canAlwaysQualifier> , <https://w3id.org/linkflows/superpattern/terms/canFrequentlyNotQualifier> , <https://w3id.org/linkflows/superpattern/terms/canFrequentlyQualifier> , <https://w3id.org/linkflows/superpattern/terms/canGenerallyNotQualifier> , <https://w3id.org/linkflows/superpattern/terms/canGenerallyQualifier> , <https://w3id.org/linkflows/superpattern/terms/canMostlyNotQualifier> , <https://w3id.org/linkflows/superpattern/terms/canMostlyQualifier> , <https://w3id.org/linkflows/superpattern/terms/canNeverQualifier> , <https://w3id.org/linkflows/superpattern/terms/canSometimesNotQualifier> , <https://w3id.org/linkflows/superpattern/terms/canSometimesQualifier> , <https://w3id.org/linkflows/superpattern/terms/frequentlyNotQualifier> , <https://w3id.org/linkflows/superpattern/terms/frequentlyQualifier> , <https://w3id.org/linkflows/superpattern/terms/generallyNotQualifier> , <https://w3id.org/linkflows/superpattern/terms/generallyQualifier> , <https://w3id.org/linkflows/superpattern/terms/mostlyNotQualifier> , <https://w3id.org/linkflows/superpattern/terms/mostlyQualifier> , <https://w3id.org/linkflows/superpattern/terms/neverQualifier> , <https://w3id.org/linkflows/superpattern/terms/sometimesNotQualifier> , <https://w3id.org/linkflows/superpattern/terms/sometimesQualifier> .
  sub:relation a nt:RestrictedChoicePlaceholder ;
    rdfs:label "URI of the relation type" ;
    nt:possibleValue <https://w3id.org/linkflows/superpattern/terms/affects> , <https://w3id.org/linkflows/superpattern/terms/causes> , <https://w3id.org/linkflows/superpattern/terms/contributesTo> , <https://w3id.org/linkflows/superpattern/terms/cooccursWith> , <https://w3id.org/linkflows/superpattern/terms/decreases> , <https://w3id.org/linkflows/superpattern/terms/enables> , <https://w3id.org/linkflows/superpattern/terms/follows> , <https://w3id.org/linkflows/superpattern/terms/hasDifferentValueFrom> , <https://w3id.org/linkflows/superpattern/terms/hasLargerValueThan> , <https://w3id.org/linkflows/superpattern/terms/hasSameValueAs> , <https://w3id.org/linkflows/superpattern/terms/hasSimilarValueAs> , <https://w3id.org/linkflows/superpattern/terms/hasSmallerValueThan> , <https://w3id.org/linkflows/superpattern/terms/includes> , <https://w3id.org/linkflows/superpattern/terms/increases> , <https://w3id.org/linkflows/superpattern/terms/inhibits> , <https://w3id.org/linkflows/superpattern/terms/isCausedBy> , <https://w3id.org/linkflows/superpattern/terms/isFollowedBy> , <https://w3id.org/linkflows/superpattern/terms/isIncludedIn> , <https://w3id.org/linkflows/superpattern/terms/isNecessaryAndSufficientFor> , <https://w3id.org/linkflows/superpattern/terms/isSameAs> , <https://w3id.org/linkflows/superpattern/terms/prevents> , <https://w3id.org/linkflows/superpattern/terms/requires> .
  sub:spi a nt:IntroducedResource , nt:LocalResource ;
    rdfs:label "SPI: - this super-pattern instance" .
  sub:st0 rdf:object <https://w3id.org/linkflows/superpattern/terms/SuperPatternInstance> ;
    rdf:predicate rdf:type ;
    rdf:subject sub:spi .
  sub:st1 rdf:object sub:label ;
    rdf:predicate rdfs:label ;
    rdf:subject sub:spi .
  sub:st2 rdf:object sub:contextClass ;
    rdf:predicate <https://w3id.org/linkflows/superpattern/terms/hasContextClass> ;
    rdf:subject sub:spi .
  sub:st3 rdf:object sub:subjectClass ;
    rdf:predicate <https://w3id.org/linkflows/superpattern/terms/hasSubjectClass> ;
    rdf:subject sub:spi .
  sub:st4 rdf:object sub:qualifier ;
    rdf:predicate <https://w3id.org/linkflows/superpattern/terms/hasQualifier> ;
    rdf:subject sub:spi ;
    a nt:OptionalStatement .
  sub:st5 rdf:object sub:relation ;
    rdf:predicate <https://w3id.org/linkflows/superpattern/terms/hasRelation> ;
    rdf:subject sub:spi .
  sub:st6 rdf:object sub:objectClass ;
    rdf:predicate <https://w3id.org/linkflows/superpattern/terms/hasObjectClass> ;
    rdf:subject sub:spi .
  sub:subjectClass a nt:GuidedChoicePlaceholder ;
    rdfs:label "URI of the subject class" ;
    nt:possibleValuesFromApi "http://purl.org/nanopub/api/find_signed_things?type=http%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23Class&searchterm=" , "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .
  rdf:type rdfs:label "This is a - links a thing (left) to a class it belongs (right)" .
  rdfs:label rdfs:label "Informally, it can be shown as - links a formal identifier (left) to a human-readable name (right)" .
  <https://w3id.org/linkflows/superpattern/terms/SuperPatternInstance> rdfs:label "super-pattern instance - a statement that conforms to the super-pattern" .
  <https://w3id.org/linkflows/superpattern/terms/UniversalContext> rdfs:label "universal context (i.e. no context restriction) - The universal context is used in a super-pattern when the subject and object instances of a super-pattern statement happen outside of any obvious context entities (such as the context of \"organism\" in the case of genes affecting diseases)" .
  <https://w3id.org/linkflows/superpattern/terms/affects> rdfs:label "affects - the subject instance positively or negatively affects the intensity or frequency of the activity instance of the object" .
  <https://w3id.org/linkflows/superpattern/terms/alwaysQualifier> rdfs:label "always - true in 100% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/canAlwaysQualifier> rdfs:label "can always - can be made true in 100% cases" .
  <https://w3id.org/linkflows/superpattern/terms/canFrequentlyNotQualifier> rdfs:label "can frequently not - can be made true in at most 90% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/canFrequentlyQualifier> rdfs:label "can frequently - can be made true in at least 10% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/canGenerallyNotQualifier> rdfs:label "can generally not - can be made true in at most 10% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/canGenerallyQualifier> rdfs:label "can generally - can be made true in at least 90% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/canMostlyNotQualifier> rdfs:label "can mostly not - can be made true in at most 50% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/canMostlyQualifier> rdfs:label "can mostly - can be made true in at least 50% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/canNeverQualifier> rdfs:label "can never - can be made true in 0% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/canSometimesNotQualifier> rdfs:label "can sometimes not - can be made true in at most 99.9% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/canSometimesQualifier> rdfs:label "can sometimes - can be made true in at least 0.1% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/causes> rdfs:label "causes - the subject instance causes the existence of the object instance" .
  <https://w3id.org/linkflows/superpattern/terms/contributesTo> rdfs:label "contributes to - the subject instance positively affects the intensity or frequency of the activity instance of the object" .
  <https://w3id.org/linkflows/superpattern/terms/cooccursWith> rdfs:label "co-occurs with - the subject instance is close to the object instance in terms of space and time" .
  <https://w3id.org/linkflows/superpattern/terms/decreases> rdfs:label "decreases - the subject instance causes the value of the object instance to decrease" .
  <https://w3id.org/linkflows/superpattern/terms/enables> rdfs:label "enables - the subject instance causes the activity instance of the object to happen" .
  <https://w3id.org/linkflows/superpattern/terms/follows> rdfs:label "follows - the object instance came into existence before the subject instance" .
  <https://w3id.org/linkflows/superpattern/terms/frequentlyNotQualifier> rdfs:label "frequently not - true in at most 90% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/frequentlyQualifier> rdfs:label "frequently - true in at least 10% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/generallyNotQualifier> rdfs:label "generally not - true in at most 10% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/generallyQualifier> rdfs:label "generally - true in at least 90% of the cases" .
  <https://w3id.org/linkflows/superpattern/terms/hasContextClass> rdfs:label "In the context of all things of type - specifies the context class (right) for the given super-pattern instance (left)" .
  <https://w3id.org/linkflows/superpattern/terms/hasDifferentValueFrom> rdfs:label "has different value from - the quantifiable subject instance has a value that is different from the quantifiable object instance" .
  <https://w3id.org/linkflows/superpattern/terms/hasLargerValueThan> rdfs:label "has larger value than - the quantifiable subject instance has a larger value than the quantifiable object instance" .
  <https://w3id.org/linkflows/superpattern/terms/hasObjectClass> rdfs:label "... to things of type - specifies the object class (right) for the given super-pattern instance (left)" .
  <https://w3id.org/linkflows/superpattern/terms/hasQualifier> rdfs:label "... (qualifier) - specifies the qualifier (right) for the given super-pattern statement (left)" .
  <https://w3id.org/linkflows/superpattern/terms/hasRelation> rdfs:label "... have a relation of type - specifies the relation type (right) for the given super-pattern statement (left)" .
  <https://w3id.org/linkflows/superpattern/terms/hasSameValueAs> rdfs:label "has same value as - the quantifiable subject instance has the same value as the quantifiable object instance" .
  <https://w3id.org/linkflows/superpattern/terms/hasSimilarValueAs> rdfs:label "has similar value as - the quantifiable subject instance has a similar value as the quantifiable object instance" .
  <https://w3id.org/linkflows/superpattern/terms/hasSmallerValueThan> rdfs:label "has smaller value than - the quantifiable subject instance has a smaller value than the quantifiable object instance" .
  <https://w3id.org/linkflows/superpattern/terms/hasSubjectClass> rdfs:label "... things of type - specifies the subject class (right) for the given super-pattern instance (left)" .
  <https://w3id.org/linkflows/superpattern/terms/includes> rdfs:label "includes - the subject instance spatiotemporally includes the object instance" .
  <https://w3id.org/linkflows/superpattern/terms/increases> rdfs:label "increases - the subject instance causes the value of the object instance to increase" .
  <https://w3id.org/linkflows/superpattern/terms/inhibits> rdfs:label "inhibits - the subject instance negatively affects the intensity or frequency of the activity instance of the object" .
  <https://w3id.org/linkflows/superpattern/terms/isCausedBy> rdfs:label "is caused by - the existence of the subject instance is caused by the object instance" .
  <https://w3id.org/linkflows/superpattern/terms/isFollowedBy> rdfs:label "is followed by - the subject instance comes into existence before the object instance" .
  <https://w3id.org/linkflows/superpattern/terms/isIncludedIn> rdfs:label "is included in - the object instance spatiotemporally includes the subject instance" .
  <https://w3id.org/linkflows/superpattern/terms/isNecessaryAndSufficientFor> rdfs:label "is necessary and sufficient for - the subject instance causes the existence of the object instance, which would not come to exist if the subject did not exist" .
  <https://w3id.org/linkflows/superpattern/terms/isSameAs> rdfs:label "is same as - the subject instance and the object instance are the same individual" .
  <https://w3id.org/linkflows/superpattern/terms/mostlyNotQualifier> rdfs:label "mostly not - true in at most 50% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/mostlyQualifier> rdfs:label "mostly - true in at least 50% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/neverQualifier> rdfs:label "never - true in 0% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/prevents> rdfs:label "prevents - the subject instance causes the activity instance of the object not to happen" .
  <https://w3id.org/linkflows/superpattern/terms/requires> rdfs:label "requires - the subject instance would not come to exist if the object instance did not exist" .
  <https://w3id.org/linkflows/superpattern/terms/sometimesNotQualifier> rdfs:label "sometimes not - true in at most 99.9% of cases" .
  <https://w3id.org/linkflows/superpattern/terms/sometimesQualifier> rdfs:label "sometimes - true in at least 0.1% of cases" .
}
sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 .
}
sub:pubinfo {
  sub:sig npx:hasAlgorithm "RSA" ;
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCjDGQCS1S+SRnERDuYDXOugdYUP0efEquHJEEHAbU/uLzBVlga89zqrNPCS7fBE6lArBUWEmT8eLKdMapyqvAzI1J3jUWTMhDJF+XFBkUiuiFfNSc4vJJcmi0yujtnuzXsRIG202jyaP4f5ULoskFwaZOSBZJfiE0dsB3D7DTIAQIDAQAB" ;
    npx:hasSignature "FU4UPnLmW2MkjHWcqUiSXcEXHapgYMy61nl696SptW6x0GEysNlBhuTigTpRD/XPjz6vXgHsJRdPqfEC14x5g2m6aH8fUcFlUpZdfbKYxl/+WcSjhwSajdpWnUkex8WBb2VQ5ptnEJwYeE/aOEi6VIuqEsHQxozyvmm70gQFVjo=" ;
    npx:hasSignatureTarget this: .
  this: dct:created "2023-07-26T15:25:13.464Z"^^xsd:dateTime ;
    dct:creator orcid:0000-0002-1267-0234 ;
    dct:license <https://creativecommons.org/licenses/by/4.0/> ;
    prov:wasDerivedFrom <http://purl.org/np/RAy3tITXPlULFLXxAxek39GLqLdqKkNM5hIzUOZxxjMmI> ;
    nt:wasCreatedFromProvenanceTemplate <http://purl.org/np/RANwQa4ICWS5SOjw7gp99nBpXBasapwtZF1fIM3H2gYTM> ;
    nt:wasCreatedFromPubinfoTemplate <http://purl.org/np/RAA2MfqdBCzmz9yVWjKLXNbyfBNcwsMmOqcNUxkk1maIM> , <http://purl.org/np/RABngHbKpoJ3U9Nebc8mX_KUdv_vXw28EejqAyQya5zVA> , <http://purl.org/np/RAh1gm83JiG5M6kDxXhaYT1l49nCzyrckMvTzcPn-iv90> ;
    nt:wasCreatedFromTemplate <http://purl.org/np/RAcePQpCDGpHwy7tKiEkZ-r1dqWahglraKXhSAwXp_nEs> .
}