[ { "@graph" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw", "@type" : [ "http://www.nanopub.org/nschema#Nanopublication" ], "http://www.nanopub.org/nschema#hasAssertion" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/pubinfo" } ] } ], "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/Head" }, { "@graph" : [ { "@id" : "http://purl.obolibrary.org/obo/RO_0002303", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "has habitat" } ] }, { "@id" : "http://www.w3.org/1999/02/22-rdf-syntax-ns#type", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "is an instance of" } ] }, { "@id" : "http://www.w3.org/2000/01/rdf-schema#comment", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "has the free-text comment" } ] }, { "@id" : "http://www.w3.org/2002/07/owl#sameAs", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "is the same as" } ] }, { "@id" : "https://w3id.org/biolink/vocab/object", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "links the organism to the environment" } ] }, { "@id" : "https://w3id.org/biolink/vocab/predicate", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "refers to the relation" } ] }, { "@id" : "https://w3id.org/biolink/vocab/subject", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "refers to - links an association to its subject" } ] }, { "@id" : "https://w3id.org/biolink/vocab/timepoint", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "has the time stamp - points to the date and time associated with this relation or organism (e.g. date of collection); if occurrence URI is given, this is redundant and does not need to be filled in" } ] }, { "@id" : "https://w3id.org/kpxl/biodiv/terms/OrganismToEnvironmentAssociation", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "an association of an organism to an environment" } ] }, { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasDepth", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "has the depth" } ] }, { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasDissolvedOxygenConcentration", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "has the dissolved oxygen concentration" } ] }, { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasLifeCycleStage", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "has the life cycle stage" } ] }, { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "has the location coordinates - points to the location coordinates associated with this relation or organism (e.g. place of collection); if occurrence URI is given, this is redundant and does not need to be filled in" } ] }, { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasOccurrence", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "has the occurrence - links an organism to a record of a specific occurrence of it" } ] }, { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasSalinity", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "has the salinity" } ] }, { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "is used as defined in" } ] }, { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasTaxonName", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "has the name - links a taxon usage to a taxon name" } ] }, { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasTemperature", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "has the temperature" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/assertion", "@type" : [ "https://w3id.org/np/o/ntemplate/AssertionTemplate" ], "http://purl.org/dc/terms/description" : [ { "@value" : "

Such a nanopublication expresses an association between an organism instance and an aquatic environment, expressing that the given organism was observed in the specified type of environment, including information about salinity, temperature, and depth.

" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "Expressing an association between an organism and an aquatic environment" } ], "https://w3id.org/np/o/ntemplate/hasDefaultProvenance" : [ { "@id" : "http://purl.org/np/RA2VjRiJ5AsNnPHDXuOqvsEJwTwqtj5rBb-OFkpPOzd9s" } ], "https://w3id.org/np/o/ntemplate/hasNanopubLabelPattern" : [ { "@value" : "Organism of ${taxonname} - ${relation} - ${environment}" } ], "https://w3id.org/np/o/ntemplate/hasStatement" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st00" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st05" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st09" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st10" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st11" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st12" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st20" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st25" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st30" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st81" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st82" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st85" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st86" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st87" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st88" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st89" }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st90" } ], "https://w3id.org/np/o/ntemplate/hasTag" : [ { "@value" : "Biodiversity" } ], "https://w3id.org/np/o/ntemplate/hasTargetNanopubType" : [ { "@id" : "https://w3id.org/kpxl/biodiv/terms/BiodivNanopub" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/association", "@type" : [ "https://w3id.org/np/o/ntemplate/IntroducedResource", "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "this association" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/comment", "@type" : [ "https://w3id.org/np/o/ntemplate/LongLiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "short explanation related to the above statement" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/coordinates", "@type" : [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "lat/long coordinates in format like '+47.37+8.54' or with altitude '+47.37+8.54+410.5'" } ], "https://w3id.org/np/o/ntemplate/hasRegex" : [ { "@value" : "[+-][0-9]+(\\.[0-9]+)?[+-][0-9]+(\\.[0-9]+)?([+-][0-9]+(\\.[0-9]+)?)?" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/depth", "@type" : [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "depth below sea level in meters" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/environment", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "the environment to be associated with the organism" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "https://www.ebi.ac.uk/ols/api/select?ontology=envo&fieldList=iri,label,description&q=" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/lifecyclestage", "@type" : [ "https://w3id.org/np/o/ntemplate/RestrictedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "select the life cycle stage of the organism; leave blank if unknown" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFrom" : [ { "@id" : "http://purl.org/np/RAVZS2MV-siFEqsgFTtgSoKA5qJkp7r1nM_n-MqPkvgdE" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/occurrence", "@type" : [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc." } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/organism", "@type" : [ "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "the organism" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/organismAlt", "@type" : [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature)" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/oxygenConcentration", "@type" : [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "dissolved oxygen concentration in ml/l" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/relation", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "the relation between the organism and the environment" } ], "https://w3id.org/np/o/ntemplate/possibleValue" : [ { "@id" : "http://purl.obolibrary.org/obo/RO_0002303" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/salinity", "@type" : [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "salinity" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st00", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "https://w3id.org/kpxl/biodiv/terms/OrganismToEnvironmentAssociation" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "http://www.w3.org/1999/02/22-rdf-syntax-ns#type" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/association" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st05", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/relation" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/biolink/vocab/predicate" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/association" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st09", "@type" : [ "https://w3id.org/np/o/ntemplate/AdvancedStatement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/organism" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/biolink/vocab/subject" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/association" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st10", "@type" : [ "https://w3id.org/np/o/ntemplate/AdvancedStatement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/taxon" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "http://www.w3.org/1999/02/22-rdf-syntax-ns#type" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/organism" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st11", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/taxonname" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasTaxonName" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/taxon" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st12", "@type" : [ "https://w3id.org/np/o/ntemplate/AdvancedStatement", "https://w3id.org/np/o/ntemplate/OptionalStatement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/taxondef" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/taxon" } ] }, { "@id" : "https://w3id.org/np/RA1T2IWD1NE7giRP0Yw0fGHH9EddlvZetEs3Nt63bXtxw/st20", "@type" : [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : 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