[ { "@graph" : [ { "@id" : "https://w3id.org/np/RA2NXh9QH9kEJblq1AI6GGafML2T25aD8cMPmmvzFR_rc", "@type" : [ "http://www.nanopub.org/nschema#Nanopublication" ], "http://www.nanopub.org/nschema#hasAssertion" : [ { "@id" : "https://w3id.org/np/RA2NXh9QH9kEJblq1AI6GGafML2T25aD8cMPmmvzFR_rc/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance" : [ { "@id" : "https://w3id.org/np/RA2NXh9QH9kEJblq1AI6GGafML2T25aD8cMPmmvzFR_rc/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo" : [ { "@id" : "https://w3id.org/np/RA2NXh9QH9kEJblq1AI6GGafML2T25aD8cMPmmvzFR_rc/pubinfo" } ] } ], "@id" : "https://w3id.org/np/RA2NXh9QH9kEJblq1AI6GGafML2T25aD8cMPmmvzFR_rc/Head" }, { "@graph" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus.fasta", "@type" : [ "http://purl.org/wf4ever/wfprov#Artifact" ], "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ { "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/17" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_A_L1_101bp180IS45X_1.fq", "@type" : [ "http://purl.org/wf4ever/wfprov#Artifact" ], "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ { "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/18" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_A_L1_101bp180IS45X_2.fq", "@type" : [ "http://purl.org/wf4ever/wfprov#Artifact" ], "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ { "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/19" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_B_L3_37bp3500IS45X_1.fq", "@type" : [ "http://purl.org/wf4ever/wfprov#Artifact" ], "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ { "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/20" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_B_L3_37bp3500IS45X_2.fq", "@type" : [ "http://purl.org/wf4ever/wfprov#Artifact" ], "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ { "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/21" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#N003bb036f6b64fb6bee352161d423250", "@type" : [ "http://purl.org/wf4ever/roterms#inputValue" ], "http://purl.org/wf4ever/roterms#portName" : [ { "@value" : "KmerFreq AR/Library1/Reverse FASTQ file" } ], "http://purl.org/wf4ever/roterms#resource" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_A_L1_101bp180IS45X_2.fq" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#N026919dbca3d46a4896c5b21dde7ca60", "@type" : [ "http://purl.org/wf4ever/roterms#inputValue" ], "http://purl.org/wf4ever/roterms#portName" : [ { "@value" : "SOAPdenovo2/Library2/Reverse FASTQ file" } ], "http://purl.org/wf4ever/roterms#resource" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_B_L3_37bp3500IS45X_2.fq" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#N57bf95dede65492cb1fc4d613557e08d", "@type" : [ "http://purl.org/wf4ever/roterms#inputValue" ], "http://purl.org/wf4ever/roterms#portName" : [ { "@value" : "GAGE/Reference genome file in FASTA format" } ], "http://purl.org/wf4ever/roterms#resource" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus.fasta" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#N9b669593d3d1461b81002ccb37986765", "@type" : [ "http://purl.org/wf4ever/wfdesc#Input" ], "http://purl.org/wf4ever/wfdesc#hasArtifact" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_B_L3_37bp3500IS45X_1.fq" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "Workflow input file for SOAPdenovo2" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#Na127b693f85f46e3a8e09c3041419be9", "@type" : [ "http://purl.org/wf4ever/wfprov#WorkflowRun" ], "http://purl.org/wf4ever/wfprov#describedByWorkflow" : [ { "@value" : "Workflows/Galaxy-Workflow-Workflow_constructed_from_history__reproduce_s.aureus_pipeline_.ga" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#Na6e29fd855544e74979b955f3c854125", "@type" : [ "http://purl.org/wf4ever/wfdesc#Input" ], "http://purl.org/wf4ever/wfdesc#hasArtifact" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_B_L3_37bp3500IS45X_2.fq" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "TODO:Upload and share the data" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "Workflow input file for SOAPdenovo2" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#Na76146553f0b4588be6a6bd36c974989", "@type" : [ "http://purl.org/wf4ever/wfdesc#Input" ], "http://purl.org/wf4ever/wfdesc#hasArtifact" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus.fasta" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "Workflow input file for GAGE/Reference genome file in FASTA format" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#Nc52483b33082462d8ed7982e0ecf9b05", "@type" : [ "http://purl.org/wf4ever/roterms#inputValue" ], "http://purl.org/wf4ever/roterms#portName" : [ { "@value" : "KmerFreq AR/Library1/Forward FASTQ file" } ], "http://purl.org/wf4ever/roterms#resource" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_A_L1_101bp180IS45X_1.fq" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#Ncea9d5a4904e41f7b30f2117fccd3d35", "@type" : [ "http://purl.org/wf4ever/wfdesc#Output" ], "http://purl.org/wf4ever/wfdesc#hasArtifact" : [ { "@value" : "Outputs/gage.out.Tabular" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "Workflow output file" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#Nd5918c99bacc4194a8aeba689f3f5aa0", "@type" : [ "http://purl.org/wf4ever/wfdesc#Input" ], "http://purl.org/wf4ever/wfdesc#hasArtifact" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_A_L1_101bp180IS45X_2.fq" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "Workflow input file for KmerFreq AR" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#Nf3ad862987224007a9c075571dd3e6eb", "@type" : [ "http://purl.org/wf4ever/wfdesc#Input" ], "http://purl.org/wf4ever/wfdesc#hasArtifact" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_A_L1_101bp180IS45X_1.fq" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "Workflow input file for KmerFreq AR" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#Nf6477456e35347bc95840236f6cd9150", "@type" : [ "http://purl.org/wf4ever/roterms#inputValue" ], "http://purl.org/wf4ever/roterms#portName" : [ { "@value" : "SOAPdenovo2/Library2/Forward FASTQ file" } ], "http://purl.org/wf4ever/roterms#resource" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_B_L3_37bp3500IS45X_1.fq" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#subject/-822177813", "@type" : [ "https://w3id.org/contentdesc#Expression" ], "http://www.w3.org/2004/02/skos/core#prefLabel" : [ { "@value" : "S. Aureus" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#subject/1225089391", "@type" : [ "https://w3id.org/contentdesc#Domain" ], "http://www.w3.org/2004/02/skos/core#prefLabel" : [ { "@value" : "mechanics" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#subject/13125", "@type" : [ "https://w3id.org/contentdesc#Concept" ], "http://www.w3.org/2004/02/skos/core#prefLabel" : [ { "@value" : "assembly" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#subject/1321314030", "@type" : [ "https://w3id.org/contentdesc#Expression" ], "http://www.w3.org/2004/02/skos/core#prefLabel" : [ { "@value" : "genome assembly" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#subject/1810438714", "@type" : [ "https://w3id.org/contentdesc#Domain" ], "http://www.w3.org/2004/02/skos/core#prefLabel" : [ { "@value" : "genetics" } ] }, { "@id" : "http://w3id.org/ro-id/rohub/model#subject/30002", "@type" : [ "https://w3id.org/contentdesc#Concept" ], "http://www.w3.org/2004/02/skos/core#prefLabel" : [ { "@value" : "Application" } ] }, { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/", "@type" : [ "http://purl.org/wf4ever/ro#ResearchObject", "http://purl.org/wf4ever/roevo#LiveRO", "http://schema.org/Dataset" ], "http://purl.org/pav/importedBy" : [ { "@id" : "mailto:service-account-generation-service" } ], "http://schema.org/author" : [ { "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc" } ], "http://schema.org/contentSize" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#integer", "@value" : "71593" } ], "http://schema.org/contentUrl" : [ { "@value" : "https://api.rohub.org/api/ros/2e023e94-f276-4281-8a0d-45568bb3755c/crate/download/" } ], "http://schema.org/creator" : [ { "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc" } ], "http://schema.org/dateCreated" : [ { "@value" : "2014-07-31 10:08:03.820000+00:00" } ], "http://schema.org/dateModified" : [ { "@value" : "2025-10-18 11:54:52.614522+00:00" } ], "http://schema.org/datePublished" : [ { "@value" : "2014-07-31 10:08:03.820000+00:00" } ], "http://schema.org/description" : [ { "@value" : "Application of SOAP2denovo2 to the S. Aureus genome assembly" } ], "http://schema.org/encodingFormat" : [ { "@value" : "application/ld+json" } ], "http://schema.org/hasPart" : [ { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/38c3aa7c-e5ef-4391-8311-a6b436332c37" }, { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/39c7f910-c339-4bbb-852c-604b5ce45a6f" }, { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/4091dd41-abea-4c37-bffb-c163d4466f65" }, { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/c557d542-2bbf-4f9f-b5d0-2bca2cf067ad" }, { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/resources/053d555c-c7e5-4f01-be3f-b98446dc23dc" } ], "http://schema.org/identifier" : [ { "@value" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c" } ], "http://schema.org/license" : [ { "@id" : "https://choosealicense.com/no-permission/" } ], "http://schema.org/name" : [ { "@value" : "SOAP2denovo2-Aureus" } ], "http://w3id.org/ro-id/rohub/model#enrichmentSubject" : [ { "@id" : "https://w3id.org/ro-id/enrichment/015fa0f6-7f8c-419a-afba-e0c2ebc8fcf3" }, { "@id" : "https://w3id.org/ro-id/enrichment/167148f3-5ba7-4e5b-8c25-a5718a16f4be" }, { "@id" : "https://w3id.org/ro-id/enrichment/1c783315-a111-4968-a484-ad55d950e790" }, { "@id" : "https://w3id.org/ro-id/enrichment/271d799d-7037-4b6b-a277-f17e3cf2e36b" }, { "@id" : "https://w3id.org/ro-id/enrichment/2c5f6fc7-2e62-4b9c-942e-ffba18859737" }, { "@id" : "https://w3id.org/ro-id/enrichment/309240e6-ddee-404d-ad5e-7dbf21ebf741" }, { "@id" : "https://w3id.org/ro-id/enrichment/537f933d-fe79-4e61-8882-0baa881fb94d" }, { "@id" : "https://w3id.org/ro-id/enrichment/55507668-dbd6-437e-88ee-0a4800f50f22" }, { "@id" : "https://w3id.org/ro-id/enrichment/7cf3cdba-79cc-4e68-aeb0-a1c068e31793" }, { "@id" : "https://w3id.org/ro-id/enrichment/ad03e18f-0c0e-42ab-9cbc-ae8bcd7dbed8" }, { "@id" : "https://w3id.org/ro-id/enrichment/c36e0b3b-6736-4cd3-82c9-a0d1d7c6ab74" }, { "@id" : "https://w3id.org/ro-id/enrichment/cf23ad8f-37dd-4db7-83b5-f5233ed6e78b" }, { "@id" : "https://w3id.org/ro-id/enrichment/e811a3e4-bade-4117-92aa-73e08ac7221b" }, { "@id" : "https://w3id.org/ro-id/enrichment/f9471243-02b9-486b-bd91-21965b50a4e1" } ], "https://www.w3.org/ns/iana/link-relations/relation#cite-as" : [ { "@value" : "Raul Palma. \"SOAP2denovo2-Aureus.\" ROHub. Jul 31 ,2014. https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c." } ] }, { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/38c3aa7c-e5ef-4391-8311-a6b436332c37", "@type" : [ "http://purl.org/wf4ever/wf4ever#Folder", "http://schema.org/Dataset" ], "http://schema.org/name" : [ { "@value" : "Statements" } ] }, { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/39c7f910-c339-4bbb-852c-604b5ce45a6f", "@type" : [ "http://purl.org/wf4ever/wf4ever#Folder", "http://schema.org/Dataset" ], "http://schema.org/hasPart" : [ { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/resources/8d28fd47-26d3-4831-8287-b768a6bfafe6" } ], "http://schema.org/name" : [ { "@value" : "Workflows" } ] }, { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/4091dd41-abea-4c37-bffb-c163d4466f65", "@type" : [ "http://purl.org/wf4ever/wf4ever#Folder", "http://schema.org/Dataset" ], "http://schema.org/name" : [ { "@value" : "NanoStm" } ] }, { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/c557d542-2bbf-4f9f-b5d0-2bca2cf067ad", "@type" : [ "http://purl.org/wf4ever/wf4ever#Folder", "http://schema.org/Dataset" ], "http://schema.org/hasPart" : [ { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/resources/b62060e1-d0d6-4d6a-8a06-617fc1892700" } ], "http://schema.org/name" : [ { "@value" : "Outputs" } ] }, { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/resources/053d555c-c7e5-4f01-be3f-b98446dc23dc", "@type" : [ "http://purl.org/wf4ever/roterms#Sketch", "http://purl.org/wf4ever/wf4ever#Resource", "http://schema.org/MediaObject" ], "http://schema.org/author" : [ { "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc" } ], "http://schema.org/contentSize" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#integer", "@value" : "66514" } ], "http://schema.org/contentUrl" : [ { "@value" : "https://api.rohub.org/api/resources/053d555c-c7e5-4f01-be3f-b98446dc23dc/download/" } ], "http://schema.org/creator" : [ { "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc" } ], "http://schema.org/dateCreated" : [ { "@value" : "2014-08-01 08:51:17.138000+00:00" } ], "http://schema.org/dateModified" : [ { "@value" : "2022-03-25 16:46:54.443012+00:00" } ], "http://schema.org/encodingFormat" : [ { "@value" : "image/png" } ], "http://schema.org/license" : [ { "@id" : "https://choosealicense.com/no-permission/" } ], "http://schema.org/name" : [ { "@value" : "sketch.png" } ], "http://schema.org/sdDatePublished" : [ { "@value" : "2014-08-01 08:51:17.138000+00:00" } ] }, { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/resources/8d28fd47-26d3-4831-8287-b768a6bfafe6", "@type" : [ "http://purl.org/wf4ever/wf4ever#Resource", "http://schema.org/MediaObject", "https://bioschemas.org/ComputationalWorkflow" ], "http://purl.org/wf4ever/roterms#inputSelected" : [ { "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/17" }, { "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/18" }, { "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/19" }, { "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/21" } ], "http://purl.org/wf4ever/roterms#inputValue" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#N003bb036f6b64fb6bee352161d423250" }, { "@id" : "http://w3id.org/ro-id/rohub/model#N026919dbca3d46a4896c5b21dde7ca60" }, { "@id" : "http://w3id.org/ro-id/rohub/model#N57bf95dede65492cb1fc4d613557e08d" }, { "@id" : "http://w3id.org/ro-id/rohub/model#Nc52483b33082462d8ed7982e0ecf9b05" } ], "http://purl.org/wf4ever/wfdesc#hasInput" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#N9b669593d3d1461b81002ccb37986765" }, { "@id" : "http://w3id.org/ro-id/rohub/model#Na6e29fd855544e74979b955f3c854125" }, { "@id" : "http://w3id.org/ro-id/rohub/model#Nd5918c99bacc4194a8aeba689f3f5aa0" }, { "@id" : "http://w3id.org/ro-id/rohub/model#Nf3ad862987224007a9c075571dd3e6eb" } ], "http://purl.org/wf4ever/wfdesc#hasOutput" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#Ncea9d5a4904e41f7b30f2117fccd3d35" } ], "http://purl.org/wf4ever/wfdesc#hasWorkflowDefinition" : [ { "@id" : "http://galaxy.cbiit.cuhk.edu.hk/u/gigascience/w/rluo2012-example-1-soapdenovo2-saureus" } ], "http://schema.org/author" : [ { "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc" } ], "http://schema.org/contentSize" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#integer", "@value" : "15681" } ], "http://schema.org/contentUrl" : [ { "@value" : "https://api.rohub.org/api/resources/8d28fd47-26d3-4831-8287-b768a6bfafe6/download/" } ], "http://schema.org/creator" : [ { "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc" } ], "http://schema.org/dateCreated" : [ { "@value" : "2014-07-31 10:09:34.217000+00:00" } ], "http://schema.org/dateModified" : [ { "@value" : "2022-03-25 16:46:55.708205+00:00" } ], "http://schema.org/description" : [ { "@value" : "Galaxy workflow for reproducing Table 2 of SOAPdenovo paper" } ], "http://schema.org/license" : [ { "@id" : "https://choosealicense.com/no-permission/" } ], "http://schema.org/name" : [ { "@value" : "Galaxy workflow for reproducing Table 2 of SOAPdenovo paper" } ], "http://schema.org/sdDatePublished" : [ { "@value" : "2014-07-31 10:09:34.217000+00:00" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Galaxy workflow for reproducing Table 2 of SOAPdenovo paper" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "Galaxy workflow for reproducing Table 2 of SOAPdenovo paper" } ], "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ { "@id" : "http://w3id.org/isa/soapdenovo2/assay_protocol_ref/14" } ] }, { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/resources/b62060e1-d0d6-4d6a-8a06-617fc1892700", "@type" : [ "http://purl.org/wf4ever/roterms#Result", "http://purl.org/wf4ever/wf4ever#Resource", "http://schema.org/MediaObject" ], "http://schema.org/author" : [ { "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc" } ], "http://schema.org/contentSize" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#integer", "@value" : "31" } ], "http://schema.org/contentUrl" : [ { "@value" : "https://api.rohub.org/api/resources/b62060e1-d0d6-4d6a-8a06-617fc1892700/download/" } ], "http://schema.org/creator" : [ { "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc" } ], "http://schema.org/dateCreated" : [ { "@value" : "2014-07-31 10:10:24.821000+00:00" } ], "http://schema.org/dateModified" : [ { "@value" : "2022-03-25 16:46:57.542753+00:00" } ], "http://schema.org/license" : [ { "@id" : "https://choosealicense.com/no-permission/" } ], "http://schema.org/name" : [ { "@value" : "Results calculating the N50 and corrected N50 scores" } ], "http://schema.org/sdDatePublished" : [ { "@value" : "2014-07-31 10:10:24.821000+00:00" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "Results calculating the N50 and corrected N50 scores" } ], "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ { "@id" : "http://w3id.org/isa/soapdenovo2/derived_data_file/3" } ], "http://www.w3.org/ns/prov#wasDerivedFrom" : [ { "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/17" }, { "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/18" }, { "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/19" }, { "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/20" } ], "http://www.w3.org/ns/prov#wasGeneratedBy" : [ { "@id" : "http://w3id.org/ro-id/rohub/model#Na127b693f85f46e3a8e09c3041419be9" } ] }, { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/ro-crate-metadata.json", "@type" : [ "http://schema.org/CreativeWork" ], "http://purl.org/dc/terms/conformsTo" : [ { "@id" : "https://w3id.org/ro/crate/1.1" } ], "http://schema.org/about" : [ { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/" } ] }, { "@id" : "https://w3id.org/ro-id/enrichment/015fa0f6-7f8c-419a-afba-e0c2ebc8fcf3", "@type" : [ "https://w3id.org/ro/terms/earth-science#Phrase" ], "http://schema.org/name" : [ { "@value" : "genome assembly" } ], "https://w3id.org/ro/terms/earth-science#normScore" : [ { "@value" : "99.6996996996997" } ], "https://w3id.org/ro/terms/earth-science#score" : [ { "@value" : "99.6" } ] }, { "@id" : "https://w3id.org/ro-id/enrichment/167148f3-5ba7-4e5b-8c25-a5718a16f4be", "@type" : [ "https://w3id.org/ro/terms/earth-science#NASA" ], "http://schema.org/name" : [ { "@value" : "astronautics (general)" } ], "https://w3id.org/ro/terms/earth-science#normScore" : [ { "@value" : "100.0" } ], "https://w3id.org/ro/terms/earth-science#score" : [ { "@value" : "0.6523571610450745" } ] }, { "@id" : "https://w3id.org/ro-id/enrichment/1c783315-a111-4968-a484-ad55d950e790", "@type" : [ "https://w3id.org/ro/terms/earth-science#NASA" ], "http://schema.org/name" : [ { "@value" : "astronautics" } ], "https://w3id.org/ro/terms/earth-science#normScore" : [ { "@value" : "100.0" } ], "https://w3id.org/ro/terms/earth-science#score" : [ { "@value" : "0.6523571610450745" } ] }, { "@id" : "https://w3id.org/ro-id/enrichment/271d799d-7037-4b6b-a277-f17e3cf2e36b", "@type" : [ "https://w3id.org/ro/terms/earth-science#Sentence" ], "http://schema.org/name" : [ { "@value" : "Application of SOAP2denovo2 to the S. Aureus genome assembly" } ], "https://w3id.org/ro/terms/earth-science#normScore" : [ { "@value" : "94.6946946946947" } ], "https://w3id.org/ro/terms/earth-science#score" : [ { "@value" : "94.6" } ] }, { "@id" : "https://w3id.org/ro-id/enrichment/2c5f6fc7-2e62-4b9c-942e-ffba18859737", "@type" : [ "https://w3id.org/ro/terms/earth-science#Concept" ], "http://schema.org/name" : [ { "@value" : "diligence" } ], "https://w3id.org/ro/terms/earth-science#normScore" : [ { "@value" : "33.58348968105065" } ], "https://w3id.org/ro/terms/earth-science#score" : [ { "@value" : "17.9" } ] }, { "@id" : "https://w3id.org/ro-id/enrichment/309240e6-ddee-404d-ad5e-7dbf21ebf741", "@type" : [ "https://w3id.org/ro/terms/earth-science#FieldOfResearch" ], "http://schema.org/name" : [ { "@value" : "earth sciences" } ], "https://w3id.org/ro/terms/earth-science#normScore" : [ { "@value" : "100.0" } ], "https://w3id.org/ro/terms/earth-science#score" : [ { "@value" : "0.7194013595581055" } ] }, { "@id" : "https://w3id.org/ro-id/enrichment/537f933d-fe79-4e61-8882-0baa881fb94d", "@type" : [ "https://w3id.org/ro/terms/earth-science#Lemma" ], "http://schema.org/name" : [ { "@value" : "application" } ], "https://w3id.org/ro/terms/earth-science#normScore" : [ { "@value" : "17.070484581497794" } ], "https://w3id.org/ro/terms/earth-science#score" : [ { "@value" : "15.5" } ] }, { "@id" : "https://w3id.org/ro-id/enrichment/55507668-dbd6-437e-88ee-0a4800f50f22", "@type" : [ "https://w3id.org/ro/terms/earth-science#Concept" ], "http://schema.org/name" : [ { "@value" : "genome" } ], "https://w3id.org/ro/terms/earth-science#normScore" : [ { "@value" : "66.41651031894935" } ], "https://w3id.org/ro/terms/earth-science#score" : [ { "@value" : "35.4" } ] }, { "@id" : "https://w3id.org/ro-id/enrichment/7cf3cdba-79cc-4e68-aeb0-a1c068e31793", "@type" : [ "https://w3id.org/ro/terms/earth-science#Lemma" ], "http://schema.org/name" : [ { "@value" : "genome" } ], "https://w3id.org/ro/terms/earth-science#normScore" : [ { "@value" : "41.519823788546255" } ], "https://w3id.org/ro/terms/earth-science#score" : [ { "@value" : "37.7" } ] }, { "@id" : "https://w3id.org/ro-id/enrichment/ad03e18f-0c0e-42ab-9cbc-ae8bcd7dbed8", "@type" : [ "https://w3id.org/ro/terms/earth-science#IPTC" ], "http://schema.org/name" : [ { "@value" : "Genetics" } ], "https://w3id.org/ro/terms/earth-science#path" : [ { "@value" : "Science and technology/Natural science/Biology/Genetics" } ] }, { "@id" : "https://w3id.org/ro-id/enrichment/c36e0b3b-6736-4cd3-82c9-a0d1d7c6ab74", "@type" : [ "https://w3id.org/ro/terms/earth-science#Lemma" ], "http://schema.org/name" : [ { "@value" : "S. Aureus" } ], "https://w3id.org/ro/terms/earth-science#normScore" : [ { "@value" : "41.409691629955944" } ], "https://w3id.org/ro/terms/earth-science#score" : [ { "@value" : "37.6" } ] }, { "@id" : "https://w3id.org/ro-id/enrichment/cf23ad8f-37dd-4db7-83b5-f5233ed6e78b", "@type" : [ "https://w3id.org/ro/terms/earth-science#Phrase" ], "http://schema.org/name" : [ { "@value" : "application of SOAP2denovo2" } ], "https://w3id.org/ro/terms/earth-science#normScore" : [ { "@value" : "0.3003003003003003" } ], "https://w3id.org/ro/terms/earth-science#score" : [ { "@value" : "0.3" } ] }, { "@id" : "https://w3id.org/ro-id/enrichment/e811a3e4-bade-4117-92aa-73e08ac7221b", "@type" : [ "https://w3id.org/ro/terms/earth-science#FieldOfResearch" ], "http://schema.org/name" : [ { "@value" : "oceanography" } ], "https://w3id.org/ro/terms/earth-science#normScore" : [ { "@value" : "100.0" } ], "https://w3id.org/ro/terms/earth-science#score" : [ { "@value" : "0.7194013595581055" } ] }, { "@id" : "https://w3id.org/ro-id/enrichment/f9471243-02b9-486b-bd91-21965b50a4e1", "@type" : [ "https://w3id.org/ro/terms/earth-science#Sentence" ], "http://schema.org/name" : [ { "@value" : "SOAP2denovo2-Aureus." } ], "https://w3id.org/ro/terms/earth-science#normScore" : [ { "@value" : "5.305305305305306" } ], "https://w3id.org/ro/terms/earth-science#score" : [ { "@value" : "5.3" } ] }, { "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc", "@type" : [ "http://xmlns.com/foaf/0.1/Agent" ], "http://schema.org/name" : [ { "@value" : "Raul Palma" } ] }, { "@id" : "mailto:service-account-enrichment", "@type" : [ "http://xmlns.com/foaf/0.1/Agent" ], "http://schema.org/name" : [ { "@value" : "service-account-enrichment" } ] }, { "@id" : "mailto:service-account-generation-service", "@type" : [ "http://xmlns.com/foaf/0.1/Agent" ], "http://schema.org/name" : [ { "@value" : "service-account-generation-service" } ] } ], "@id" : "https://w3id.org/np/RA2NXh9QH9kEJblq1AI6GGafML2T25aD8cMPmmvzFR_rc/assertion" }, { "@graph" : [ { "@id" : "https://w3id.org/np/RA2NXh9QH9kEJblq1AI6GGafML2T25aD8cMPmmvzFR_rc/assertion", "http://www.w3.org/ns/prov#wasDerivedFrom" : [ { "@id" : "https://api.rohub.org/api/ros/2e023e94-f276-4281-8a0d-45568bb3755c/crate/download/ro-crate-metadata.json" } ] } ], "@id" : "https://w3id.org/np/RA2NXh9QH9kEJblq1AI6GGafML2T25aD8cMPmmvzFR_rc/provenance" }, { "@graph" : [ { "@id" : "https://w3id.org/np/RA2NXh9QH9kEJblq1AI6GGafML2T25aD8cMPmmvzFR_rc", "@type" : [ "http://purl.org/nanopub/x/RoCrateNanopub" ], "http://purl.org/dc/terms/created" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#dateTime", "@value" : "2025-11-11T16:44:53.047+01:00" } ], "http://purl.org/nanopub/x/introduces" : [ { "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "SOAP2denovo2-Aureus" } ] }, { "@id" : "https://w3id.org/np/RA2NXh9QH9kEJblq1AI6GGafML2T25aD8cMPmmvzFR_rc/sig", "http://purl.org/nanopub/x/hasAlgorithm" : [ { "@value" : "RSA" } ], "http://purl.org/nanopub/x/hasPublicKey" : [ { "@value" : "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEA4pPaESKwmC6l37P86K6TNLq6yeQtc7m9CvcqauLs/1FC0viHvQnFBgxj0a+loPDv/Egwe6OqFpa0iW9Ypnyz9YPoh+pxbRXonbuMOb+8Ry9hXZ+TEKfWjhjVDGEaClwfRwglh2HI/xfV4CD9AgvDOEoZQiyta8a90PYwJ3G6e70oCHTn61+OWTkI9KRYHOYgg3btdy2Z7q/30PTFawb2ZT5aIfIJYobUYv2a7yhtcqWCHZeKv0bxGnRjTFNx1rscBMlLJSzvRtpQc1cCRVEPFZHo1adaXCI9tGvn4cxeNQ96y8dxkN1XhpaJairde+23MDzf42Oe97KG2HYzKiyVnQIDAQAB" } ], "http://purl.org/nanopub/x/hasSignature" : [ { "@value" : "DhThnh4MAqxtk1gZkSfhm10gSycLAtzE2ZbPE7cnWvpcr4oCVFDg1b97gG5Rxh2Eb8UtaliHTtueT1QZzH1vHDqWPXPwbsv1kaMWWVCk4+W2MGP6j3qiEZTCpvHS8aGOPXGINP8nkYq5UMPAfitwVA4/3cgiekR0BgTCMP9oF6Dn9dmeLGWhN5IC9TwTtMoZJCZ550p8d9keMyvrG52vMOhWp04cObWVYK5dcrv0mfrD0bEH4lJVxzsmyVRtSXicNej7OzAcM7p/fLR59rsVtkuLwwaOxazpzV4pVVatBcrqBkoLj60nif33FZ6kD4JG1NSrFGA52/IDw0Chu+7xdw==" } ], "http://purl.org/nanopub/x/hasSignatureTarget" : [ { "@id" : "https://w3id.org/np/RA2NXh9QH9kEJblq1AI6GGafML2T25aD8cMPmmvzFR_rc" } ], "http://purl.org/nanopub/x/signedBy" : [ { "@id" : "https://w3id.org/kpxl/gen/terms/RoCrateBot" } ] } ], "@id" : "https://w3id.org/np/RA2NXh9QH9kEJblq1AI6GGafML2T25aD8cMPmmvzFR_rc/pubinfo" } ]