sub:assertion {
eco:0000006 rdfs:label "experimental evidence" .
eco:0000180 rdfs:label "clinical study evidence" .
eco:0000204 rdfs:label "author statement" .
eco:0000205 rdfs:label "curator inference" .
eco:0000362 rdfs:label "computational inference" .
eco:0005548 rdfs:label "biological system reconstruction evidence based on inference from background scientific knowledge" .
eco:0006152 rdfs:label "medical practitioner statement evidence" .
eco:0006153 rdfs:label "self-reported individual's statement evidence" .
eco:0007672 rdfs:label "computational evidence" .
ro:0002434 rdfs:label "interacts with" .
sub:assertion a nt:AssertionTemplate ;
rdfs:label "Defining a biomedical association with its context using the BioLink model" ;
nt:hasStatement sub:st00 ,
sub:st01 ,
sub:st02 ,
sub:st03 ,
sub:st04 ,
sub:st05 ,
sub:st06 ,
sub:st07 ,
sub:st08 ,
sub:st09 ,
sub:st10 ,
sub:st11 ,
sub:st12 ,
sub:st13 .
sub:association a nt:LocalResource ;
rdfs:label "This association" .
sub:associationPredicate a nt:GuidedChoicePlaceholder ;
rdfs:label "search for the association predicate in the BioLink model" ;
nt:possibleValue bl:affects ,
bl:correlated_with ,
bl:interacts_with ,
bl:treated_by ,
bl:treats ;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" .
sub:associationRelation a nt:GuidedChoicePlaceholder ;
rdfs:label "provide the relation between the 2 concepts of the association from RO" ;
nt:possibleValue ro:0002434 ;
nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ro&q=" .
sub:associationType a nt:GuidedChoicePlaceholder ;
rdfs:label "provide the association class from the BioLink model" ;
nt:possibleValue bl:Association ,
bl:ChemicalToDiseaseOrPhenotypicFeatureAssociation ,
bl:ChemicalToGeneAssociation ,
bl:ChemicalToPathwayAssociation ,
bl:GeneToDiseaseAssociation ,
bl:PairwiseGeneToGeneInteraction ;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" .
sub:evidencetype a nt:GuidedChoicePlaceholder ;
rdfs:label "add the evidence code from the Evidence Code Ontology (ECO) here" ;
nt:possibleValue eco:0000000 ,
eco:0000006 ,
eco:0000180 ,
eco:0000204 ,
eco:0000205 ,
eco:0000362 ,
eco:0005548 ,
eco:0006152 ,
eco:0006153 ,
eco:0007672 ;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=ECO&q=" .
sub:hasDrug1 a nt:GuidedChoicePlaceholder ;
rdfs:label "provide the drugs used by this target group from Translator NameResolution API" ;
nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" .
sub:hasDrug2 a nt:GuidedChoicePlaceholder ;
rdfs:label "provide the drugs used by this target group from Translator NameResolution API" ;
nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" .
sub:hasPhenotype a nt:GuidedChoicePlaceholder ;
rdfs:label "provide a URI for the phenotype of the target group from Translator NameResolution API" ;
nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" .
sub:lifeStage a nt:LocalResource ;
rdfs:label "The target group life stage" .
sub:lifeStageName a nt:LiteralPlaceholder ;
rdfs:label "describe the life stage or age of the target group (e.g. Adults, 18-40)" .
sub:negated a nt:RestrictedChoicePlaceholder ;
nt:possibleValue xsd:false ,
xsd:true .
sub:object a nt:GuidedChoicePlaceholder ;
rdfs:label "target biomedical entity from Translator NameResolution API" ;
nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" .
sub:objectType a nt:GuidedChoicePlaceholder ;
rdfs:label "search for the object class in the BioLink model" ;
nt:possibleValue bl:ChemicalSubstance ,
bl:Disease ,
bl:Drug ,
bl:Gene ,
bl:PhenotypicFeature ,
bl:Protein ;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" .
sub:providedBy a nt:LiteralPlaceholder ;
rdfs:label "add the identifier of the dataset or agent providing the associations" .
sub:publication a nt:UriPlaceholder ;
rdfs:label "add the URI of a publication supporting this association (doi, PubMed, URL...)" .
sub:readableassertion a nt:LiteralPlaceholder ;
rdfs:label "describe the assertion concisely (e.g. tylenol treats pain in adults patients)" .
sub:st00 rdf:object sub:readableassertion ;
rdf:predicate rdfs:label ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 1 .
sub:st01 rdf:object sub:subject ;
rdf:predicate rdf:subject ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 2 .
sub:st02 rdf:object sub:subjectType ;
rdf:predicate bl:category ;
rdf:subject sub:subject ;
a rdf:Statement ;
nt:statementOrder 2 .
sub:st03 rdf:object sub:object ;
rdf:predicate rdf:object ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 4 .
sub:st04 rdf:object sub:objectType ;
rdf:predicate bl:category ;
rdf:subject sub:object ;
a rdf:Statement ;
nt:statementOrder 2 .
sub:st05 rdf:object sub:associationType ;
rdf:predicate bl:association_type ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 0 .
sub:st06 rdf:object sub:associationRelation ;
rdf:predicate bl:relation ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 1 .
sub:st07 rdf:object sub:associationPredicate ;
rdf:predicate rdf:predicate ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 1 .
sub:st08 rdf:object sub:negated ;
rdf:predicate bl:negated ;
rdf:subject sub:association ;
a nt:OptionalStatement ;
nt:statementOrder 6 .
sub:st09 rdf:object sub:providedBy ;
rdf:predicate bl:provided_by ;
rdf:subject sub:association ;
a nt:OptionalStatement ;
nt:statementOrder 7 .
sub:st10 rdf:object sub:publication ;
rdf:predicate bl:publications ;
rdf:subject sub:association ;
a nt:OptionalStatement ;
nt:statementOrder 8 .
sub:st11 a nt:GroupedStatement ,
nt:OptionalStatement ;
nt:hasStatement sub:st11a ,
sub:st11b ,
sub:st11c .
sub:st11a rdf:object sub:lifeStage ;
rdf:predicate bl:stage_qualifier ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 13 .
sub:st11b rdf:object bl:LifeStage ;
rdf:predicate rdf:type ;
rdf:subject sub:lifeStage ;
a rdf:Statement ;
nt:statementOrder 13 .
sub:st11c rdf:object sub:lifeStageName ;
rdf:predicate rdfs:label ;
rdf:subject sub:lifeStage ;
a rdf:Statement ;
nt:statementOrder 13 .
sub:st12 a nt:GroupedStatement ,
nt:OptionalStatement ;
nt:hasStatement sub:st12a ,
sub:st12b ,
sub:st12c ,
sub:st12d ,
sub:st12e ,
sub:st12f .
sub:st12a rdf:object sub:targetgroup ;
rdf:predicate bl:has_evidence ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 12 .
sub:st12b rdf:object sub:evidencetype ;
rdf:predicate rdf:type ;
rdf:subject sub:targetgroup ;
a rdf:Statement ;
nt:statementOrder 12 .
sub:st12c rdf:object sub:hasPhenotype ;
rdf:predicate bl:has_phenotype ;
rdf:subject sub:targetgroup ;
a rdf:Statement ;
nt:statementOrder 12 .
sub:st12d rdf:object sub:hasDrug1 ;
rdf:predicate bl:has_drug ;
rdf:subject sub:targetgroup ;
a nt:OptionalStatement ;
nt:statementOrder 15 .
sub:st12e rdf:object sub:hasDrug2 ;
rdf:predicate bl:has_drug ;
rdf:subject sub:targetgroup ;
a nt:OptionalStatement ;
nt:statementOrder 16 .
sub:st12f rdf:object bl:EvidenceType ;
rdf:predicate bl:category ;
rdf:subject sub:targetgroup ;
a nt:OptionalStatement ;
nt:statementOrder 12 .
sub:st13 rdf:object rdf:Statement ;
rdf:predicate rdf:type ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 13 .
sub:subject a nt:GuidedChoicePlaceholder ;
rdfs:label "source biomedical entity from Translator NameResolution API" ;
nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" .
sub:subjectType a nt:GuidedChoicePlaceholder ;
rdfs:label "search for the subject class in the BioLink model" ;
nt:possibleValue bl:ChemicalSubstance ,
bl:Disease ,
bl:Drug ,
bl:Gene ,
bl:PhenotypicFeature ,
bl:Protein ;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" .
sub:targetgroup a nt:LocalResource ;
rdfs:label "The target group evidence" .
rdf:Statement rdfs:label "association Statement" .
rdf:object rdfs:label "has object" .
rdf:predicate rdfs:label "has predicate" .
rdf:subject rdfs:label "has subject" .
rdf:type rdfs:label "has type" .
rdfs:label rdfs:label "has label" .
xsd:false rdfs:label "false" .
xsd:true rdfs:label "true" .
bl:EvidenceType rdfs:label "EvidenceType" .
bl:association_type rdfs:label "has BioLink type" .
bl:category rdfs:label "is in biolink category" .
bl:description rdfs:label "is described by" .
bl:has_drug rdfs:label "uses drug" .
bl:has_phenotype rdfs:label "has phenotype" .
bl:id rdfs:label "has id" .
bl:negated rdfs:label "is negated" .
bl:provided_by rdfs:label "is provided by" .
bl:publications rdfs:label "has publications" .
bl:qualifiers rdfs:label "is qualified by" .
bl:relation rdfs:label "has relation" .
bl:stage_qualifier rdfs:label "is qualified by life stage" .
}