[ {
  "@graph" : [ {
    "@id" : "https://w3id.org/np/RA4CMMIozWZkEHojzZtjCLnddIjgEnLcULrYjETxaHG94",
    "@type" : [ "http://www.nanopub.org/nschema#Nanopublication" ],
    "http://www.nanopub.org/nschema#hasAssertion" : [ {
      "@id" : "https://w3id.org/np/RA4CMMIozWZkEHojzZtjCLnddIjgEnLcULrYjETxaHG94/assertion"
    } ],
    "http://www.nanopub.org/nschema#hasProvenance" : [ {
      "@id" : "https://w3id.org/np/RA4CMMIozWZkEHojzZtjCLnddIjgEnLcULrYjETxaHG94/provenance"
    } ],
    "http://www.nanopub.org/nschema#hasPublicationInfo" : [ {
      "@id" : "https://w3id.org/np/RA4CMMIozWZkEHojzZtjCLnddIjgEnLcULrYjETxaHG94/pubinfo"
    } ]
  } ],
  "@id" : "https://w3id.org/np/RA4CMMIozWZkEHojzZtjCLnddIjgEnLcULrYjETxaHG94/Head"
}, {
  "@graph" : [ {
    "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus.fasta",
    "@type" : [ "http://purl.org/wf4ever/wfprov#Artifact" ],
    "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ {
      "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/17"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_A_L1_101bp180IS45X_1.fq",
    "@type" : [ "http://purl.org/wf4ever/wfprov#Artifact" ],
    "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ {
      "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/18"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_A_L1_101bp180IS45X_2.fq",
    "@type" : [ "http://purl.org/wf4ever/wfprov#Artifact" ],
    "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ {
      "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/19"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_B_L3_37bp3500IS45X_1.fq",
    "@type" : [ "http://purl.org/wf4ever/wfprov#Artifact" ],
    "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ {
      "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/20"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_B_L3_37bp3500IS45X_2.fq",
    "@type" : [ "http://purl.org/wf4ever/wfprov#Artifact" ],
    "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ {
      "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/21"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#N003bb036f6b64fb6bee352161d423250",
    "@type" : [ "http://purl.org/wf4ever/roterms#inputValue" ],
    "http://purl.org/wf4ever/roterms#portName" : [ {
      "@value" : "KmerFreq AR/Library1/Reverse FASTQ file"
    } ],
    "http://purl.org/wf4ever/roterms#resource" : [ {
      "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_A_L1_101bp180IS45X_2.fq"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#N026919dbca3d46a4896c5b21dde7ca60",
    "@type" : [ "http://purl.org/wf4ever/roterms#inputValue" ],
    "http://purl.org/wf4ever/roterms#portName" : [ {
      "@value" : "SOAPdenovo2/Library2/Reverse FASTQ file"
    } ],
    "http://purl.org/wf4ever/roterms#resource" : [ {
      "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_B_L3_37bp3500IS45X_2.fq"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#N57bf95dede65492cb1fc4d613557e08d",
    "@type" : [ "http://purl.org/wf4ever/roterms#inputValue" ],
    "http://purl.org/wf4ever/roterms#portName" : [ {
      "@value" : "GAGE/Reference genome file in FASTA format"
    } ],
    "http://purl.org/wf4ever/roterms#resource" : [ {
      "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus.fasta"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#N9b669593d3d1461b81002ccb37986765",
    "@type" : [ "http://purl.org/wf4ever/wfdesc#Input" ],
    "http://purl.org/wf4ever/wfdesc#hasArtifact" : [ {
      "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_B_L3_37bp3500IS45X_1.fq"
    } ],
    "http://www.w3.org/2000/01/rdf-schema#label" : [ {
      "@value" : "Workflow input file for SOAPdenovo2"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#Na127b693f85f46e3a8e09c3041419be9",
    "@type" : [ "http://purl.org/wf4ever/wfprov#WorkflowRun" ],
    "http://purl.org/wf4ever/wfprov#describedByWorkflow" : [ {
      "@value" : "Workflows/Galaxy-Workflow-Workflow_constructed_from_history__reproduce_s.aureus_pipeline_.ga"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#Na6e29fd855544e74979b955f3c854125",
    "@type" : [ "http://purl.org/wf4ever/wfdesc#Input" ],
    "http://purl.org/wf4ever/wfdesc#hasArtifact" : [ {
      "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_B_L3_37bp3500IS45X_2.fq"
    } ],
    "http://www.w3.org/2000/01/rdf-schema#comment" : [ {
      "@value" : "TODO:Upload and share the data"
    } ],
    "http://www.w3.org/2000/01/rdf-schema#label" : [ {
      "@value" : "Workflow input file for SOAPdenovo2"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#Na76146553f0b4588be6a6bd36c974989",
    "@type" : [ "http://purl.org/wf4ever/wfdesc#Input" ],
    "http://purl.org/wf4ever/wfdesc#hasArtifact" : [ {
      "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus.fasta"
    } ],
    "http://www.w3.org/2000/01/rdf-schema#label" : [ {
      "@value" : "Workflow input file for GAGE/Reference genome file in FASTA format"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#Nc52483b33082462d8ed7982e0ecf9b05",
    "@type" : [ "http://purl.org/wf4ever/roterms#inputValue" ],
    "http://purl.org/wf4ever/roterms#portName" : [ {
      "@value" : "KmerFreq AR/Library1/Forward FASTQ file"
    } ],
    "http://purl.org/wf4ever/roterms#resource" : [ {
      "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_A_L1_101bp180IS45X_1.fq"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#Ncea9d5a4904e41f7b30f2117fccd3d35",
    "@type" : [ "http://purl.org/wf4ever/wfdesc#Output" ],
    "http://purl.org/wf4ever/wfdesc#hasArtifact" : [ {
      "@value" : "Outputs/gage.out.Tabular"
    } ],
    "http://www.w3.org/2000/01/rdf-schema#label" : [ {
      "@value" : "Workflow output file"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#Nd5918c99bacc4194a8aeba689f3f5aa0",
    "@type" : [ "http://purl.org/wf4ever/wfdesc#Input" ],
    "http://purl.org/wf4ever/wfdesc#hasArtifact" : [ {
      "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_A_L1_101bp180IS45X_2.fq"
    } ],
    "http://www.w3.org/2000/01/rdf-schema#label" : [ {
      "@value" : "Workflow input file for KmerFreq AR"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#Nf3ad862987224007a9c075571dd3e6eb",
    "@type" : [ "http://purl.org/wf4ever/wfdesc#Input" ],
    "http://purl.org/wf4ever/wfdesc#hasArtifact" : [ {
      "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_A_L1_101bp180IS45X_1.fq"
    } ],
    "http://www.w3.org/2000/01/rdf-schema#label" : [ {
      "@value" : "Workflow input file for KmerFreq AR"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#Nf6477456e35347bc95840236f6cd9150",
    "@type" : [ "http://purl.org/wf4ever/roterms#inputValue" ],
    "http://purl.org/wf4ever/roterms#portName" : [ {
      "@value" : "SOAPdenovo2/Library2/Forward FASTQ file"
    } ],
    "http://purl.org/wf4ever/roterms#resource" : [ {
      "@id" : "http://w3id.org/ro-id/rohub/model#Inputs/saureus_B_L3_37bp3500IS45X_1.fq"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#subject/-822177813",
    "@type" : [ "https://w3id.org/contentdesc#Expression" ],
    "http://www.w3.org/2004/02/skos/core#prefLabel" : [ {
      "@value" : "S. Aureus"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#subject/1225089391",
    "@type" : [ "https://w3id.org/contentdesc#Domain" ],
    "http://www.w3.org/2004/02/skos/core#prefLabel" : [ {
      "@value" : "mechanics"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#subject/13125",
    "@type" : [ "https://w3id.org/contentdesc#Concept" ],
    "http://www.w3.org/2004/02/skos/core#prefLabel" : [ {
      "@value" : "assembly"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#subject/1321314030",
    "@type" : [ "https://w3id.org/contentdesc#Expression" ],
    "http://www.w3.org/2004/02/skos/core#prefLabel" : [ {
      "@value" : "genome assembly"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#subject/1810438714",
    "@type" : [ "https://w3id.org/contentdesc#Domain" ],
    "http://www.w3.org/2004/02/skos/core#prefLabel" : [ {
      "@value" : "genetics"
    } ]
  }, {
    "@id" : "http://w3id.org/ro-id/rohub/model#subject/30002",
    "@type" : [ "https://w3id.org/contentdesc#Concept" ],
    "http://www.w3.org/2004/02/skos/core#prefLabel" : [ {
      "@value" : "Application"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/",
    "@type" : [ "http://purl.org/wf4ever/ro#ResearchObject", "http://purl.org/wf4ever/roevo#LiveRO", "http://schema.org/Dataset" ],
    "http://purl.org/pav/importedBy" : [ {
      "@id" : "mailto:service-account-generation-service"
    } ],
    "http://schema.org/author" : [ {
      "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc"
    } ],
    "http://schema.org/contentSize" : [ {
      "@type" : "http://www.w3.org/2001/XMLSchema#integer",
      "@value" : "71593"
    } ],
    "http://schema.org/contentUrl" : [ {
      "@value" : "https://api.rohub.org/api/ros/2e023e94-f276-4281-8a0d-45568bb3755c/crate/download/"
    } ],
    "http://schema.org/creator" : [ {
      "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc"
    } ],
    "http://schema.org/dateCreated" : [ {
      "@value" : "2014-07-31 10:08:03.820000+00:00"
    } ],
    "http://schema.org/dateModified" : [ {
      "@value" : "2025-10-18 11:54:52.614522+00:00"
    } ],
    "http://schema.org/datePublished" : [ {
      "@value" : "2014-07-31 10:08:03.820000+00:00"
    } ],
    "http://schema.org/description" : [ {
      "@value" : "Application of SOAP2denovo2 to the S. Aureus genome assembly"
    } ],
    "http://schema.org/encodingFormat" : [ {
      "@value" : "application/ld+json"
    } ],
    "http://schema.org/hasPart" : [ {
      "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/38c3aa7c-e5ef-4391-8311-a6b436332c37"
    }, {
      "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/39c7f910-c339-4bbb-852c-604b5ce45a6f"
    }, {
      "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/4091dd41-abea-4c37-bffb-c163d4466f65"
    }, {
      "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/c557d542-2bbf-4f9f-b5d0-2bca2cf067ad"
    }, {
      "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/resources/053d555c-c7e5-4f01-be3f-b98446dc23dc"
    } ],
    "http://schema.org/identifier" : [ {
      "@value" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c"
    } ],
    "http://schema.org/license" : [ {
      "@id" : "https://choosealicense.com/no-permission/"
    } ],
    "http://schema.org/name" : [ {
      "@value" : "SOAP2denovo2-Aureus"
    } ],
    "http://w3id.org/ro-id/rohub/model#enrichmentSubject" : [ {
      "@id" : "https://w3id.org/ro-id/enrichment/015fa0f6-7f8c-419a-afba-e0c2ebc8fcf3"
    }, {
      "@id" : "https://w3id.org/ro-id/enrichment/167148f3-5ba7-4e5b-8c25-a5718a16f4be"
    }, {
      "@id" : "https://w3id.org/ro-id/enrichment/1c783315-a111-4968-a484-ad55d950e790"
    }, {
      "@id" : "https://w3id.org/ro-id/enrichment/271d799d-7037-4b6b-a277-f17e3cf2e36b"
    }, {
      "@id" : "https://w3id.org/ro-id/enrichment/2c5f6fc7-2e62-4b9c-942e-ffba18859737"
    }, {
      "@id" : "https://w3id.org/ro-id/enrichment/309240e6-ddee-404d-ad5e-7dbf21ebf741"
    }, {
      "@id" : "https://w3id.org/ro-id/enrichment/537f933d-fe79-4e61-8882-0baa881fb94d"
    }, {
      "@id" : "https://w3id.org/ro-id/enrichment/55507668-dbd6-437e-88ee-0a4800f50f22"
    }, {
      "@id" : "https://w3id.org/ro-id/enrichment/7cf3cdba-79cc-4e68-aeb0-a1c068e31793"
    }, {
      "@id" : "https://w3id.org/ro-id/enrichment/ad03e18f-0c0e-42ab-9cbc-ae8bcd7dbed8"
    }, {
      "@id" : "https://w3id.org/ro-id/enrichment/c36e0b3b-6736-4cd3-82c9-a0d1d7c6ab74"
    }, {
      "@id" : "https://w3id.org/ro-id/enrichment/cf23ad8f-37dd-4db7-83b5-f5233ed6e78b"
    }, {
      "@id" : "https://w3id.org/ro-id/enrichment/e811a3e4-bade-4117-92aa-73e08ac7221b"
    }, {
      "@id" : "https://w3id.org/ro-id/enrichment/f9471243-02b9-486b-bd91-21965b50a4e1"
    } ],
    "https://www.w3.org/ns/iana/link-relations/relation#cite-as" : [ {
      "@value" : "Raul Palma. \"SOAP2denovo2-Aureus.\" ROHub. Jul 31 ,2014. https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c."
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/38c3aa7c-e5ef-4391-8311-a6b436332c37",
    "@type" : [ "http://purl.org/wf4ever/wf4ever#Folder", "http://schema.org/Dataset" ],
    "http://schema.org/name" : [ {
      "@value" : "Statements"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/39c7f910-c339-4bbb-852c-604b5ce45a6f",
    "@type" : [ "http://purl.org/wf4ever/wf4ever#Folder", "http://schema.org/Dataset" ],
    "http://schema.org/hasPart" : [ {
      "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/resources/8d28fd47-26d3-4831-8287-b768a6bfafe6"
    } ],
    "http://schema.org/name" : [ {
      "@value" : "Workflows"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/4091dd41-abea-4c37-bffb-c163d4466f65",
    "@type" : [ "http://purl.org/wf4ever/wf4ever#Folder", "http://schema.org/Dataset" ],
    "http://schema.org/name" : [ {
      "@value" : "NanoStm"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/folders/c557d542-2bbf-4f9f-b5d0-2bca2cf067ad",
    "@type" : [ "http://purl.org/wf4ever/wf4ever#Folder", "http://schema.org/Dataset" ],
    "http://schema.org/hasPart" : [ {
      "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/resources/b62060e1-d0d6-4d6a-8a06-617fc1892700"
    } ],
    "http://schema.org/name" : [ {
      "@value" : "Outputs"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/resources/053d555c-c7e5-4f01-be3f-b98446dc23dc",
    "@type" : [ "http://purl.org/wf4ever/roterms#Sketch", "http://purl.org/wf4ever/wf4ever#Resource", "http://schema.org/MediaObject" ],
    "http://schema.org/author" : [ {
      "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc"
    } ],
    "http://schema.org/contentSize" : [ {
      "@type" : "http://www.w3.org/2001/XMLSchema#integer",
      "@value" : "66514"
    } ],
    "http://schema.org/contentUrl" : [ {
      "@value" : "https://api.rohub.org/api/resources/053d555c-c7e5-4f01-be3f-b98446dc23dc/download/"
    } ],
    "http://schema.org/creator" : [ {
      "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc"
    } ],
    "http://schema.org/dateCreated" : [ {
      "@value" : "2014-08-01 08:51:17.138000+00:00"
    } ],
    "http://schema.org/dateModified" : [ {
      "@value" : "2022-03-25 16:46:54.443012+00:00"
    } ],
    "http://schema.org/encodingFormat" : [ {
      "@value" : "image/png"
    } ],
    "http://schema.org/license" : [ {
      "@id" : "https://choosealicense.com/no-permission/"
    } ],
    "http://schema.org/name" : [ {
      "@value" : "sketch.png"
    } ],
    "http://schema.org/sdDatePublished" : [ {
      "@value" : "2014-08-01 08:51:17.138000+00:00"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/resources/8d28fd47-26d3-4831-8287-b768a6bfafe6",
    "@type" : [ "http://purl.org/wf4ever/wf4ever#Resource", "http://schema.org/MediaObject", "https://bioschemas.org/ComputationalWorkflow" ],
    "http://purl.org/wf4ever/roterms#inputSelected" : [ {
      "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/17"
    }, {
      "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/18"
    }, {
      "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/19"
    }, {
      "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/21"
    } ],
    "http://purl.org/wf4ever/roterms#inputValue" : [ {
      "@id" : "http://w3id.org/ro-id/rohub/model#N003bb036f6b64fb6bee352161d423250"
    }, {
      "@id" : "http://w3id.org/ro-id/rohub/model#N026919dbca3d46a4896c5b21dde7ca60"
    }, {
      "@id" : "http://w3id.org/ro-id/rohub/model#N57bf95dede65492cb1fc4d613557e08d"
    }, {
      "@id" : "http://w3id.org/ro-id/rohub/model#Nc52483b33082462d8ed7982e0ecf9b05"
    } ],
    "http://purl.org/wf4ever/wfdesc#hasInput" : [ {
      "@id" : "http://w3id.org/ro-id/rohub/model#N9b669593d3d1461b81002ccb37986765"
    }, {
      "@id" : "http://w3id.org/ro-id/rohub/model#Na6e29fd855544e74979b955f3c854125"
    }, {
      "@id" : "http://w3id.org/ro-id/rohub/model#Nd5918c99bacc4194a8aeba689f3f5aa0"
    }, {
      "@id" : "http://w3id.org/ro-id/rohub/model#Nf3ad862987224007a9c075571dd3e6eb"
    } ],
    "http://purl.org/wf4ever/wfdesc#hasOutput" : [ {
      "@id" : "http://w3id.org/ro-id/rohub/model#Ncea9d5a4904e41f7b30f2117fccd3d35"
    } ],
    "http://purl.org/wf4ever/wfdesc#hasWorkflowDefinition" : [ {
      "@id" : "http://galaxy.cbiit.cuhk.edu.hk/u/gigascience/w/rluo2012-example-1-soapdenovo2-saureus"
    } ],
    "http://schema.org/author" : [ {
      "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc"
    } ],
    "http://schema.org/contentSize" : [ {
      "@type" : "http://www.w3.org/2001/XMLSchema#integer",
      "@value" : "15681"
    } ],
    "http://schema.org/contentUrl" : [ {
      "@value" : "https://api.rohub.org/api/resources/8d28fd47-26d3-4831-8287-b768a6bfafe6/download/"
    } ],
    "http://schema.org/creator" : [ {
      "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc"
    } ],
    "http://schema.org/dateCreated" : [ {
      "@value" : "2014-07-31 10:09:34.217000+00:00"
    } ],
    "http://schema.org/dateModified" : [ {
      "@value" : "2022-03-25 16:46:55.708205+00:00"
    } ],
    "http://schema.org/description" : [ {
      "@value" : "Galaxy workflow for reproducing Table 2 of SOAPdenovo paper"
    } ],
    "http://schema.org/license" : [ {
      "@id" : "https://choosealicense.com/no-permission/"
    } ],
    "http://schema.org/name" : [ {
      "@value" : "Galaxy workflow for reproducing Table 2 of SOAPdenovo paper"
    } ],
    "http://schema.org/sdDatePublished" : [ {
      "@value" : "2014-07-31 10:09:34.217000+00:00"
    } ],
    "http://www.w3.org/2000/01/rdf-schema#comment" : [ {
      "@value" : "Galaxy workflow for reproducing Table 2 of SOAPdenovo paper"
    } ],
    "http://www.w3.org/2000/01/rdf-schema#label" : [ {
      "@value" : "Galaxy workflow for reproducing Table 2 of SOAPdenovo paper"
    } ],
    "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ {
      "@id" : "http://w3id.org/isa/soapdenovo2/assay_protocol_ref/14"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/resources/b62060e1-d0d6-4d6a-8a06-617fc1892700",
    "@type" : [ "http://purl.org/wf4ever/roterms#Result", "http://purl.org/wf4ever/wf4ever#Resource", "http://schema.org/MediaObject" ],
    "http://schema.org/author" : [ {
      "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc"
    } ],
    "http://schema.org/contentSize" : [ {
      "@type" : "http://www.w3.org/2001/XMLSchema#integer",
      "@value" : "31"
    } ],
    "http://schema.org/contentUrl" : [ {
      "@value" : "https://api.rohub.org/api/resources/b62060e1-d0d6-4d6a-8a06-617fc1892700/download/"
    } ],
    "http://schema.org/creator" : [ {
      "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc"
    } ],
    "http://schema.org/dateCreated" : [ {
      "@value" : "2014-07-31 10:10:24.821000+00:00"
    } ],
    "http://schema.org/dateModified" : [ {
      "@value" : "2022-03-25 16:46:57.542753+00:00"
    } ],
    "http://schema.org/license" : [ {
      "@id" : "https://choosealicense.com/no-permission/"
    } ],
    "http://schema.org/name" : [ {
      "@value" : "Results calculating the N50 and corrected N50 scores"
    } ],
    "http://schema.org/sdDatePublished" : [ {
      "@value" : "2014-07-31 10:10:24.821000+00:00"
    } ],
    "http://www.w3.org/2000/01/rdf-schema#label" : [ {
      "@value" : "Results calculating the N50 and corrected N50 scores"
    } ],
    "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ {
      "@id" : "http://w3id.org/isa/soapdenovo2/derived_data_file/3"
    } ],
    "http://www.w3.org/ns/prov#wasDerivedFrom" : [ {
      "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/17"
    }, {
      "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/18"
    }, {
      "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/19"
    }, {
      "@id" : "http://w3id.org/isa/soapdenovo2/raw_data_file/20"
    } ],
    "http://www.w3.org/ns/prov#wasGeneratedBy" : [ {
      "@id" : "http://w3id.org/ro-id/rohub/model#Na127b693f85f46e3a8e09c3041419be9"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/ro-crate-metadata.json",
    "@type" : [ "http://schema.org/CreativeWork" ],
    "http://purl.org/dc/terms/conformsTo" : [ {
      "@id" : "https://w3id.org/ro/crate/1.1"
    } ],
    "http://schema.org/about" : [ {
      "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/enrichment/015fa0f6-7f8c-419a-afba-e0c2ebc8fcf3",
    "@type" : [ "https://w3id.org/ro/terms/earth-science#Phrase" ],
    "http://schema.org/name" : [ {
      "@value" : "genome assembly"
    } ],
    "https://w3id.org/ro/terms/earth-science#normScore" : [ {
      "@value" : "99.6996996996997"
    } ],
    "https://w3id.org/ro/terms/earth-science#score" : [ {
      "@value" : "99.6"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/enrichment/167148f3-5ba7-4e5b-8c25-a5718a16f4be",
    "@type" : [ "https://w3id.org/ro/terms/earth-science#NASA" ],
    "http://schema.org/name" : [ {
      "@value" : "astronautics (general)"
    } ],
    "https://w3id.org/ro/terms/earth-science#normScore" : [ {
      "@value" : "100.0"
    } ],
    "https://w3id.org/ro/terms/earth-science#score" : [ {
      "@value" : "0.6523571610450745"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/enrichment/1c783315-a111-4968-a484-ad55d950e790",
    "@type" : [ "https://w3id.org/ro/terms/earth-science#NASA" ],
    "http://schema.org/name" : [ {
      "@value" : "astronautics"
    } ],
    "https://w3id.org/ro/terms/earth-science#normScore" : [ {
      "@value" : "100.0"
    } ],
    "https://w3id.org/ro/terms/earth-science#score" : [ {
      "@value" : "0.6523571610450745"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/enrichment/271d799d-7037-4b6b-a277-f17e3cf2e36b",
    "@type" : [ "https://w3id.org/ro/terms/earth-science#Sentence" ],
    "http://schema.org/name" : [ {
      "@value" : "Application of SOAP2denovo2 to the S. Aureus genome assembly"
    } ],
    "https://w3id.org/ro/terms/earth-science#normScore" : [ {
      "@value" : "94.6946946946947"
    } ],
    "https://w3id.org/ro/terms/earth-science#score" : [ {
      "@value" : "94.6"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/enrichment/2c5f6fc7-2e62-4b9c-942e-ffba18859737",
    "@type" : [ "https://w3id.org/ro/terms/earth-science#Concept" ],
    "http://schema.org/name" : [ {
      "@value" : "diligence"
    } ],
    "https://w3id.org/ro/terms/earth-science#normScore" : [ {
      "@value" : "33.58348968105065"
    } ],
    "https://w3id.org/ro/terms/earth-science#score" : [ {
      "@value" : "17.9"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/enrichment/309240e6-ddee-404d-ad5e-7dbf21ebf741",
    "@type" : [ "https://w3id.org/ro/terms/earth-science#FieldOfResearch" ],
    "http://schema.org/name" : [ {
      "@value" : "earth sciences"
    } ],
    "https://w3id.org/ro/terms/earth-science#normScore" : [ {
      "@value" : "100.0"
    } ],
    "https://w3id.org/ro/terms/earth-science#score" : [ {
      "@value" : "0.7194013595581055"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/enrichment/537f933d-fe79-4e61-8882-0baa881fb94d",
    "@type" : [ "https://w3id.org/ro/terms/earth-science#Lemma" ],
    "http://schema.org/name" : [ {
      "@value" : "application"
    } ],
    "https://w3id.org/ro/terms/earth-science#normScore" : [ {
      "@value" : "17.070484581497794"
    } ],
    "https://w3id.org/ro/terms/earth-science#score" : [ {
      "@value" : "15.5"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/enrichment/55507668-dbd6-437e-88ee-0a4800f50f22",
    "@type" : [ "https://w3id.org/ro/terms/earth-science#Concept" ],
    "http://schema.org/name" : [ {
      "@value" : "genome"
    } ],
    "https://w3id.org/ro/terms/earth-science#normScore" : [ {
      "@value" : "66.41651031894935"
    } ],
    "https://w3id.org/ro/terms/earth-science#score" : [ {
      "@value" : "35.4"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/enrichment/7cf3cdba-79cc-4e68-aeb0-a1c068e31793",
    "@type" : [ "https://w3id.org/ro/terms/earth-science#Lemma" ],
    "http://schema.org/name" : [ {
      "@value" : "genome"
    } ],
    "https://w3id.org/ro/terms/earth-science#normScore" : [ {
      "@value" : "41.519823788546255"
    } ],
    "https://w3id.org/ro/terms/earth-science#score" : [ {
      "@value" : "37.7"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/enrichment/ad03e18f-0c0e-42ab-9cbc-ae8bcd7dbed8",
    "@type" : [ "https://w3id.org/ro/terms/earth-science#IPTC" ],
    "http://schema.org/name" : [ {
      "@value" : "Genetics"
    } ],
    "https://w3id.org/ro/terms/earth-science#path" : [ {
      "@value" : "Science and technology/Natural science/Biology/Genetics"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/enrichment/c36e0b3b-6736-4cd3-82c9-a0d1d7c6ab74",
    "@type" : [ "https://w3id.org/ro/terms/earth-science#Lemma" ],
    "http://schema.org/name" : [ {
      "@value" : "S. Aureus"
    } ],
    "https://w3id.org/ro/terms/earth-science#normScore" : [ {
      "@value" : "41.409691629955944"
    } ],
    "https://w3id.org/ro/terms/earth-science#score" : [ {
      "@value" : "37.6"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/enrichment/cf23ad8f-37dd-4db7-83b5-f5233ed6e78b",
    "@type" : [ "https://w3id.org/ro/terms/earth-science#Phrase" ],
    "http://schema.org/name" : [ {
      "@value" : "application of SOAP2denovo2"
    } ],
    "https://w3id.org/ro/terms/earth-science#normScore" : [ {
      "@value" : "0.3003003003003003"
    } ],
    "https://w3id.org/ro/terms/earth-science#score" : [ {
      "@value" : "0.3"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/enrichment/e811a3e4-bade-4117-92aa-73e08ac7221b",
    "@type" : [ "https://w3id.org/ro/terms/earth-science#FieldOfResearch" ],
    "http://schema.org/name" : [ {
      "@value" : "oceanography"
    } ],
    "https://w3id.org/ro/terms/earth-science#normScore" : [ {
      "@value" : "100.0"
    } ],
    "https://w3id.org/ro/terms/earth-science#score" : [ {
      "@value" : "0.7194013595581055"
    } ]
  }, {
    "@id" : "https://w3id.org/ro-id/enrichment/f9471243-02b9-486b-bd91-21965b50a4e1",
    "@type" : [ "https://w3id.org/ro/terms/earth-science#Sentence" ],
    "http://schema.org/name" : [ {
      "@value" : "SOAP2denovo2-Aureus."
    } ],
    "https://w3id.org/ro/terms/earth-science#normScore" : [ {
      "@value" : "5.305305305305306"
    } ],
    "https://w3id.org/ro/terms/earth-science#score" : [ {
      "@value" : "5.3"
    } ]
  }, {
    "@id" : "https://www.google.com/accounts/o8/id?id=AItOawl6miGQ2NYnbP2-gtGZcqRkDRukz5GNfGc",
    "@type" : [ "http://xmlns.com/foaf/0.1/Agent" ],
    "http://schema.org/name" : [ {
      "@value" : "Raul Palma"
    } ]
  }, {
    "@id" : "mailto:service-account-enrichment",
    "@type" : [ "http://xmlns.com/foaf/0.1/Agent" ],
    "http://schema.org/name" : [ {
      "@value" : "service-account-enrichment"
    } ]
  }, {
    "@id" : "mailto:service-account-generation-service",
    "@type" : [ "http://xmlns.com/foaf/0.1/Agent" ],
    "http://schema.org/name" : [ {
      "@value" : "service-account-generation-service"
    } ]
  } ],
  "@id" : "https://w3id.org/np/RA4CMMIozWZkEHojzZtjCLnddIjgEnLcULrYjETxaHG94/assertion"
}, {
  "@graph" : [ {
    "@id" : "https://w3id.org/np/RA4CMMIozWZkEHojzZtjCLnddIjgEnLcULrYjETxaHG94/assertion",
    "http://www.w3.org/ns/prov#wasDerivedFrom" : [ {
      "@id" : "https://api.rohub.org/api/ros/2e023e94-f276-4281-8a0d-45568bb3755c/crate/download/ro-crate-metadata.json"
    } ]
  } ],
  "@id" : "https://w3id.org/np/RA4CMMIozWZkEHojzZtjCLnddIjgEnLcULrYjETxaHG94/provenance"
}, {
  "@graph" : [ {
    "@id" : "https://w3id.org/np/RA4CMMIozWZkEHojzZtjCLnddIjgEnLcULrYjETxaHG94",
    "@type" : [ "http://purl.org/nanopub/x/RoCrateNanopub" ],
    "http://purl.org/dc/terms/created" : [ {
      "@type" : "http://www.w3.org/2001/XMLSchema#dateTime",
      "@value" : "2026-03-03T15:33:35.959+01:00"
    } ],
    "http://purl.org/dc/terms/creator" : [ {
      "@id" : "https://w3id.org/kpxl/gen/terms/RoCrateBot"
    } ],
    "http://purl.org/nanopub/x/introduces" : [ {
      "@id" : "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c/"
    } ],
    "http://www.w3.org/2000/01/rdf-schema#label" : [ {
      "@value" : "SOAP2denovo2-Aureus"
    } ]
  }, {
    "@id" : "https://w3id.org/np/RA4CMMIozWZkEHojzZtjCLnddIjgEnLcULrYjETxaHG94/sig",
    "http://purl.org/nanopub/x/hasAlgorithm" : [ {
      "@value" : "RSA"
    } ],
    "http://purl.org/nanopub/x/hasPublicKey" : [ {
      "@value" : "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAxszSDYX5tuCSkP7UiCtftYPFNQVTjgNu0I5fwdML2DLRDlp0xzmsQXRk8oHuvwGvG1aMjj6cpUqO+0rz2Sg/wvHOgUpkRH8VJXvmlkhafMLCMtUtk5JIx7e+fkzCby+fnmD7kMkGLrT+OaExWwEDmNlCAt0TPKcHSdwsjso2isXjtAsGevyCMke8ufnFYpjs746JES1eNzVnHnn2Kp/lqcm60GM+J8dLgRZp7fX0anW098xhKym6+xXFzqeju0vYRIHBPerv+r7skWxwk+a7Sd8msqVeYEv6NTqnyWvyWb6Yh8cvj04N6qm/T6C5FUPLQhzSaQgMVMU6yLqjPuu9DwIDAQAB"
    } ],
    "http://purl.org/nanopub/x/hasSignature" : [ {
      "@value" : "cXB+1KcoYrvLd1iNcWUP3xf4b7nsDLAJLZVNr9SrAGJ+YmZM9mqVupqRgn4jFSvxd2QIub3tiZXt7PrEiAjjSCaJZ2t7f2QOqj7dvdE1SnycFru2skfmsm4IJaTsuFlP02yqiyg4cntmHCnpjBoeYh2eUAYXOV7zOZw4BupzpujORkz6GvNoZMiuxrB+sDIT5Gp3ZWlASt2+OIlZcuz8H4NarKDurezL2BCd+pByzCwcIuXzFSDQFibZbtT5k6YkX1rzpREfYU6+fZn6uMR5nwmJZDmWNLQt5ppvpC8KybgmsXmmg0oSXv3sYCxxCjc6Ew6i2KFO7d1iFH9B3I4p1w=="
    } ],
    "http://purl.org/nanopub/x/hasSignatureTarget" : [ {
      "@id" : "https://w3id.org/np/RA4CMMIozWZkEHojzZtjCLnddIjgEnLcULrYjETxaHG94"
    } ],
    "http://purl.org/nanopub/x/signedBy" : [ {
      "@id" : "https://w3id.org/kpxl/gen/terms/RoCrateBot"
    } ]
  } ],
  "@id" : "https://w3id.org/np/RA4CMMIozWZkEHojzZtjCLnddIjgEnLcULrYjETxaHG94/pubinfo"
} ]