sub:assertion {
  sub:assertion dct:description "<p>Such a nanopublication expresses an association between an organism (normally identified as belonging to a certain taxon concept) and a nucleotide sequence (that can correspond to a gene or subunit of a gene), for example expressing that Sequence ID (INSDC / Genbank accession number or BOLD Process ID) identifies Organism X as belonging to a Taxon Concept Y.</p>" ;
    a nt:AssertionTemplate ;
    rdfs:label "Expressing an association between an organism and a nucleotide sequence" ;
    nt:hasDefaultProvenance <http://purl.org/np/RA2VjRiJ5AsNnPHDXuOqvsEJwTwqtj5rBb-OFkpPOzd9s> ;
    nt:hasNanopubLabelPattern "Organism of ${taxonname} - ${relation} - ${nucleotidesequence}" ;
    nt:hasStatement sub:st00 , sub:st05 , sub:st09 , sub:st10 , sub:st11 , sub:st12 , sub:st20 , sub:st25 , sub:st30 , sub:st81 , sub:st82 , sub:st85 , sub:st90 ;
    nt:hasTag "Biodiversity" .
  sub:association a nt:IntroducedResource , nt:LocalResource ;
    rdfs:label "this association" .
  sub:comment a nt:LongLiteralPlaceholder ;
    rdfs:label "short explanation related to the above statement" .
  sub:coordinates a nt:LiteralPlaceholder ;
    rdfs:label "lat/long coordinates in format like '+47.37+8.54' or with altitude '+47.37+8.54+410.5'" ;
    nt:hasRegex "[+-][0-9]+(\\.[0-9]+)?[+-][0-9]+(\\.[0-9]+)?([+-][0-9]+(\\.[0-9]+)?)?" .
  sub:lifecyclestage a nt:RestrictedChoicePlaceholder ;
    rdfs:label "select the life cycle stage of the organism; leave blank if unknown" ;
    nt:possibleValuesFrom <http://purl.org/np/RAVZS2MV-siFEqsgFTtgSoKA5qJkp7r1nM_n-MqPkvgdE> .
  sub:nucleotidesequence a nt:ExternalUriPlaceholder ;
    rdfs:label "INSDC / Genbank accession number (e.g. https://www.ncbi.nlm.nih.gov/nuccore/...)" .
  sub:occurrence a nt:ExternalUriPlaceholder ;
    rdfs:label "occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc." .
  sub:organism a nt:LocalResource ;
    rdfs:label "the organism" .
  sub:organismAlt a nt:ExternalUriPlaceholder ;
    rdfs:label "any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature)" .
  sub:relation a nt:RestrictedChoicePlaceholder ;
    rdfs:label "the relation between the organism and the nucleotide sequence" ;
    nt:hasDefaultValue <https://w3id.org/kpxl/biodiv/terms/hasObservedNucleotideSequence> ;
    nt:possibleValue <https://w3id.org/kpxl/biodiv/terms/hasAssembledNucleotideSequence> , <https://w3id.org/kpxl/biodiv/terms/hasObservedNucleotideSequence> , <https://w3id.org/kpxl/biodiv/terms/hasSequencedNucleotideSequence> .
  sub:st00 rdf:object <https://w3id.org/kpxl/biodiv/terms/OrganismToNucleotideSequenceAssociation> ;
    rdf:predicate rdf:type ;
    rdf:subject sub:association .
  sub:st05 rdf:object sub:relation ;
    rdf:predicate <https://w3id.org/biolink/vocab/predicate> ;
    rdf:subject sub:association .
  sub:st09 rdf:object sub:organism ;
    rdf:predicate <https://w3id.org/biolink/vocab/subject> ;
    rdf:subject sub:association .
  sub:st10 rdf:object sub:taxon ;
    rdf:predicate rdf:type ;
    rdf:subject sub:organism .
  sub:st11 rdf:object sub:taxonname ;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasTaxonName> ;
    rdf:subject sub:taxon .
  sub:st12 rdf:object sub:taxondef ;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition> ;
    rdf:subject sub:taxon ;
    a nt:OptionalStatement .
  sub:st20 rdf:object sub:lifecyclestage ;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasCycleStage> ;
    rdf:subject sub:organism ;
    a nt:OptionalStatement .
  sub:st25 rdf:object sub:occurrence ;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasOccurrence> ;
    rdf:subject sub:organism ;
    a nt:OptionalStatement .
  sub:st30 rdf:object sub:organismAlt ;
    rdf:predicate <http://www.w3.org/2002/07/owl#sameAs> ;
    rdf:subject sub:organism ;
    a nt:OptionalStatement , nt:RepeatableStatement .
  sub:st81 rdf:object sub:coordinates ;
    rdf:predicate <https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates> ;
    rdf:subject sub:association ;
    a nt:OptionalStatement .
  sub:st82 rdf:object sub:timepoint ;
    rdf:predicate <https://w3id.org/biolink/vocab/timepoint> ;
    rdf:subject sub:association ;
    a nt:OptionalStatement .
  sub:st85 rdf:object sub:nucleotidesequence ;
    rdf:predicate <https://w3id.org/biolink/vocab/object> ;
    rdf:subject sub:association .
  sub:st90 rdf:object sub:comment ;
    rdf:predicate rdfs:comment ;
    rdf:subject nt:ASSERTION ;
    a nt:OptionalStatement .
  sub:taxon a nt:LocalResource ;
    rdfs:label "the taxon concept" .
  sub:taxondef a nt:ExternalUriPlaceholder ;
    rdfs:label "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)" ;
    nt:hasRegex "(https://doi.org/|https://treatment.plazi.org/id/).+" .
  sub:taxonname a nt:GuidedChoicePlaceholder ;
    rdfs:label "search and select from list (if not found, you may paste URL from IPNI, MycoBank, Index Fungorum, or ZooBank)" ;
    nt:possibleValuesFromApi "https://vodex.petapico.org/nidx/query?rows=100&q=label:" .
  sub:timepoint a nt:LiteralPlaceholder ;
    rdfs:label "time expressed in XSD DateTime format, e.g. '2023-03-30T22:17:11Z'" ;
    nt:hasRegex "-?([1-9]\\d\\d\\d+|0\\d\\d\\d)-(0[1-9]|1[0-2])-(0[1-9]|[12]\\d|3[01])T(([01]\\d|2[0-3]):[0-5]\\d:[0-5]\\d(\\.\\d+)?|24:00:00(\\.0+)?)(Z|[+-](0\\d|1[0-4]):[0-5]\\d)?" .
  rdf:type rdfs:label "is an instance of" .
  rdfs:comment rdfs:label "has the free-text comment" .
  <http://www.w3.org/2002/07/owl#sameAs> rdfs:label "is the same as" .
  <https://w3id.org/biolink/vocab/object> rdfs:label "links the organism to the nucleotide sequence" .
  <https://w3id.org/biolink/vocab/predicate> rdfs:label "refers to the relation" .
  <https://w3id.org/biolink/vocab/subject> rdfs:label "refers to" .
  <https://w3id.org/biolink/vocab/timepoint> rdfs:label "has the time stamp - points to the date and time associated with this relation or organism (e.g. date of collection); if occurrence URI is given, this is redundant and does not need to be filled in" .
  <https://w3id.org/kpxl/biodiv/terms/OrganismToNucleotideSequenceAssociation> rdfs:label "an association of an organism to a nucleotide sequence" .
  <https://w3id.org/kpxl/biodiv/terms/hasAssembledNucleotideSequence> rdfs:label "assembled nucleotide sequence" .
  <https://w3id.org/kpxl/biodiv/terms/hasCycleStage> rdfs:label "has the life cycle stage" .
  <https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates> rdfs:label "has the location coordinates - points to the location coordinates associated with this relation or organism (e.g. place of collection); if occurrence URI is given, this is redundant and does not need to be filled in" .
  <https://w3id.org/kpxl/biodiv/terms/hasObservedNucleotideSequence> rdfs:label "observed nucleotide sequence" .
  <https://w3id.org/kpxl/biodiv/terms/hasOccurrence> rdfs:label "has the occurrence - links an organism to a record of a specific occurrence of it" .
  <https://w3id.org/kpxl/biodiv/terms/hasSequencedNucleotideSequence> rdfs:label "sequenced nucleotide sequence" .
  <https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition> rdfs:label "is used as defined in" .
  <https://w3id.org/kpxl/biodiv/terms/hasTaxonName> rdfs:label "has the name - links a taxon usage to a taxon name" .
}