sub:assertion {
eco:0000006 rdfs:label "experimental evidence" .
eco:0000180 rdfs:label "clinical study evidence" .
eco:0000204 rdfs:label "author statement" .
eco:0000205 rdfs:label "curator inference" .
eco:0000362 rdfs:label "computational inference" .
eco:0005548 rdfs:label "biological system reconstruction evidence based on inference from background scientific knowledge" .
eco:0006152 rdfs:label "medical practitioner statement evidence" .
eco:0006153 rdfs:label "self-reported individual's statement evidence" .
eco:0007672 rdfs:label "computational evidence" .
sub:assertion a nt:AssertionTemplate ;
rdfs:label "Defining a biomedical association with its context" ;
nt:hasStatement sub:st00 ,
sub:st01 ,
sub:st02 ,
sub:st03 ,
sub:st04 ,
sub:st05 ,
sub:st06 ,
sub:st07 ,
sub:st08 ,
sub:st09 ,
sub:st10 ,
sub:st11 ,
sub:st12 ,
sub:st13 ,
sub:st14 ,
sub:st15 ,
sub:st16 ,
sub:st17 ,
sub:st18 ,
sub:st19 .
sub:association a nt:LocalResource ;
rdfs:label "This association" .
sub:associationPredicate a nt:GuidedChoicePlaceholder ;
rdfs:label "search for the association predicate in the BioLink model" ;
nt:possibleValue biolink:affects ,
biolink:correlated_with ,
biolink:interacts_with ,
biolink:treated_by ,
biolink:treats ;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" .
sub:associationRelation a nt:GuidedChoicePlaceholder ;
rdfs:label "provide the relation between the 2 concepts of the association" ;
nt:possibleValuesFromApi "https://www.ebi.ac.uk/ols/api/select?ontology=ro&q=" .
sub:associationType a nt:GuidedChoicePlaceholder ;
rdfs:label "provide the association class from the BioLink model" ;
nt:possibleValue biolink:Association ,
biolink:ChemicalToDiseaseOrPhenotypicFeatureAssociation ,
biolink:ChemicalToGeneAssociation ,
biolink:ChemicalToPathwayAssociation ,
biolink:GeneToDiseaseAssociation ,
biolink:PairwiseGeneToGeneInteraction ;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" .
sub:evidencetype a nt:GuidedChoicePlaceholder ;
rdfs:label "add the evidence code from the evidence code ontology here" ;
nt:possibleValue eco:0000000 ,
eco:0000006 ,
eco:0000180 ,
eco:0000204 ,
eco:0000205 ,
eco:0000362 ,
eco:0005548 ,
eco:0006152 ,
eco:0006153 ,
eco:0007672 ;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=ECO&q=" .
sub:hasDrug1 a nt:GuidedChoicePlaceholder ;
rdfs:label "provide the drugs used by this target group" ;
nt:possibleValue sub:object ,
sub:subject ;
nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" .
sub:hasDrug2 a nt:GuidedChoicePlaceholder ;
rdfs:label "provide the drugs used by this target group" ;
nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" .
sub:hasPhenotype a nt:GuidedChoicePlaceholder ;
rdfs:label "provide a URI for the specific phenotype of the target group" ;
nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" .
sub:lifeStage a nt:LocalResource ;
rdfs:label "The target group life stage" .
sub:lifeStageName a nt:LiteralPlaceholder ;
rdfs:label "describe the life stage or age of the target group" .
sub:lifeStageType a nt:GuidedChoicePlaceholder ;
rdfs:label "provide the life stage of the target group class" ;
nt:possibleValue biolink:LifeStage ;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" .
sub:negated a nt:RestrictedChoicePlaceholder ;
nt:possibleValue xsd:false ,
xsd:true .
sub:object a nt:GuidedChoicePlaceholder ;
rdfs:label "target biomedical entity" ;
nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" .
sub:objectType a nt:GuidedChoicePlaceholder ;
rdfs:label "search for the object class in the BioLink model" ;
nt:possibleValue biolink:ChemicalSubstance ,
biolink:Disease ,
biolink:Drug ,
biolink:Gene ,
biolink:PhenotypicFeature ,
biolink:Protein ;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" .
sub:providedBy a nt:LiteralPlaceholder ;
rdfs:label "add the URI of the dataset or agent providing the associations" .
sub:publication a nt:UriPlaceholder ;
rdfs:label "add the URI of a publication supporting this association (doi, PubMed, article URL, etc)" .
sub:readableassertion a nt:LiteralPlaceholder ;
rdfs:label "describe the assertion concisely (e.g. tylenol treats pain in adults patients)" .
sub:st00 rdf:object sub:readableassertion ;
rdf:predicate rdfs:label ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 1 .
sub:st01 rdf:object sub:subject ;
rdf:predicate rdf:subject ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 2 .
sub:st02 rdf:object sub:subjectType ;
rdf:predicate biolink:category ;
rdf:subject sub:subject ;
a rdf:Statement ;
nt:statementOrder 2 .
sub:st03 rdf:object sub:object ;
rdf:predicate rdf:object ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 4 .
sub:st04 rdf:object sub:objectType ;
rdf:predicate biolink:category ;
rdf:subject sub:object ;
a rdf:Statement ;
nt:statementOrder 2 .
sub:st05 rdf:object sub:associationType ;
rdf:predicate biolink:association_type ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 0 .
sub:st06 rdf:object sub:associationRelation ;
rdf:predicate biolink:relation ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 1 .
sub:st07 rdf:object sub:associationPredicate ;
rdf:predicate rdf:predicate ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 1 .
sub:st08 rdf:object sub:negated ;
rdf:predicate biolink:negated ;
rdf:subject sub:association ;
a nt:OptionalStatement ;
nt:statementOrder 6 .
sub:st09 rdf:object sub:providedBy ;
rdf:predicate biolink:provided_by ;
rdf:subject sub:association ;
a nt:OptionalStatement ;
nt:statementOrder 7 .
sub:st10 rdf:object sub:publication ;
rdf:predicate biolink:publications ;
rdf:subject sub:association ;
a nt:OptionalStatement ;
nt:statementOrder 8 .
sub:st11 rdf:object sub:lifeStage ;
rdf:predicate biolink:stage_qualifier ;
rdf:subject sub:association ;
a nt:OptionalStatement ;
nt:statementOrder 13 .
sub:st12 rdf:object sub:lifeStageType ;
rdf:predicate rdf:type ;
rdf:subject sub:lifeStage ;
a nt:OptionalStatement ;
nt:statementOrder 13 .
sub:st13 rdf:object sub:lifeStageName ;
rdf:predicate rdfs:label ;
rdf:subject sub:lifeStage ;
a nt:OptionalStatement ;
nt:statementOrder 13 .
sub:st14 rdf:object sub:targetgroup ;
rdf:predicate biolink:has_evidence ;
rdf:subject sub:association ;
a nt:OptionalStatement ;
nt:statementOrder 12 .
sub:st15 rdf:object sub:evidencetype ;
rdf:predicate rdf:type ;
rdf:subject sub:targetgroup ;
a nt:OptionalStatement ;
nt:statementOrder 12 .
sub:st16 rdf:object sub:hasPhenotype ;
rdf:predicate biolink:has_phenotype ;
rdf:subject sub:targetgroup ;
a nt:OptionalStatement ;
nt:statementOrder 12 .
sub:st17 rdf:object sub:hasDrug1 ;
rdf:predicate biolink:has_drug ;
rdf:subject sub:targetgroup ;
a nt:OptionalStatement ;
nt:statementOrder 15 .
sub:st18 rdf:object sub:hasDrug2 ;
rdf:predicate biolink:has_drug ;
rdf:subject sub:targetgroup ;
a nt:OptionalStatement ;
nt:statementOrder 16 .
sub:st19 rdf:object biolink:EvidenceType ;
rdf:predicate biolink:category ;
rdf:subject sub:targetgroup ;
a nt:OptionalStatement ;
nt:statementOrder 12 .
sub:st20 rdf:object rdf:Statement ;
rdf:predicate rdf:type ;
rdf:subject sub:association ;
a rdf:Statement ;
nt:statementOrder 13 .
sub:subject a nt:GuidedChoicePlaceholder ;
rdfs:label "source biomedical entity" ;
nt:possibleValuesFromApi "https://name-resolution-sri.renci.org/lookup?limit=10&string=" .
sub:subjectType a nt:GuidedChoicePlaceholder ;
rdfs:label "search for the subject class in the BioLink model" ;
nt:possibleValue biolink:ChemicalSubstance ,
biolink:Disease ,
biolink:Drug ,
biolink:Gene ,
biolink:PhenotypicFeature ,
biolink:Protein ;
nt:possibleValuesFromApi "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" .
sub:targetgroup a nt:LocalResource ;
rdfs:label "The target group evidence" .
rdf:Statement rdfs:label "association Statement" .
rdf:object rdfs:label "has object" .
rdf:predicate rdfs:label "has predicate" .
rdf:subject rdfs:label "has subject" .
rdf:type rdfs:label "has type" .
rdfs:label rdfs:label "has label" .
xsd:false rdfs:label "false" .
xsd:true rdfs:label "true" .
biolink:EvidenceType rdfs:label "Target group evidence" .
biolink:association_type rdfs:label "has BioLink type" .
biolink:category rdfs:label "is in biolink category" .
biolink:description rdfs:label "is described by" .
biolink:has_drug rdfs:label "uses drug" .
biolink:has_phenotype rdfs:label "has phenotype" .
biolink:id rdfs:label "has id" .
biolink:negated rdfs:label "is negated" .
biolink:provided_by rdfs:label "is provided by" .
biolink:publications rdfs:label "has publications" .
biolink:qualifiers rdfs:label "is qualified by" .
biolink:relation rdfs:label "has relation" .
biolink:stage_qualifier rdfs:label "is qualified by life stage" .
}