[ { "@graph" : [ { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A", "@type" : [ "http://www.nanopub.org/nschema#Nanopublication" ], "http://www.nanopub.org/nschema#hasAssertion" : [ { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#assertion" } ], "http://www.nanopub.org/nschema#hasProvenance" : [ { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo" : [ { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#pubinfo" } ] } ], "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#Head" }, { "@graph" : [ { "@id" : "http://purl.obolibrary.org/obo/ECO_0000006", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "experimental evidence" } ] }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0000180", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "clinical study evidence" } ] }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0000204", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "author statement" } ] }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0000205", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "curator inference" } ] }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0000362", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "computational inference" } ] }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0005548", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "biological system reconstruction evidence based on inference from background scientific knowledge" } ] }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0006152", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "medical practitioner statement evidence" } ] }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0006153", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "self-reported individual's statement evidence" } ] }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0007672", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "computational evidence" } ] }, { "@id" : "http://purl.obolibrary.org/obo/RO_0002434", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "interacts with" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#assertion", "@type" : [ "https://w3id.org/np/o/ntemplate/AssertionTemplate" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "Defining a biomedical association with its context using the BioLink model" } ], "https://w3id.org/np/o/ntemplate/hasStatement" : [ { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st00" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st01" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st02" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st03" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st04" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st05" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st06" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st07" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st08" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st09" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st10" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st11" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st12" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st13" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st14" }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st15" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#association", "@type" : [ "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "This association" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#associationPredicate", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "search for the association predicate in the BioLink model" } ], "https://w3id.org/np/o/ntemplate/possibleValue" : [ { "@id" : "https://w3id.org/biolink/vocab/affects" }, { "@id" : "https://w3id.org/biolink/vocab/correlated_with" }, { "@id" : "https://w3id.org/biolink/vocab/interacts_with" }, { "@id" : "https://w3id.org/biolink/vocab/treated_by" }, { "@id" : "https://w3id.org/biolink/vocab/treats" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#associationRelation", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "provide the relation between the 2 concepts of the association from RO" } ], "https://w3id.org/np/o/ntemplate/possibleValue" : [ { "@id" : "http://purl.obolibrary.org/obo/RO_0002434" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "https://www.ebi.ac.uk/ols/api/select?ontology=ro&q=" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#associationType", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "provide the association class from the BioLink model" } ], "https://w3id.org/np/o/ntemplate/possibleValue" : [ { "@id" : "https://w3id.org/biolink/vocab/Association" }, { "@id" : "https://w3id.org/biolink/vocab/ChemicalToDiseaseOrPhenotypicFeatureAssociation" }, { "@id" : "https://w3id.org/biolink/vocab/ChemicalToGeneAssociation" }, { "@id" : "https://w3id.org/biolink/vocab/ChemicalToPathwayAssociation" }, { "@id" : "https://w3id.org/biolink/vocab/GeneToDiseaseAssociation" }, { "@id" : "https://w3id.org/biolink/vocab/PairwiseGeneToGeneInteraction" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#evidencetype", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "add the evidence code from the Evidence Code Ontology (ECO) here" } ], "https://w3id.org/np/o/ntemplate/possibleValue" : [ { "@id" : "http://purl.obolibrary.org/obo/ECO_0000000" }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0000006" }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0000180" }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0000204" }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0000205" }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0000362" }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0005548" }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0006152" }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0006153" }, { "@id" : "http://purl.obolibrary.org/obo/ECO_0007672" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=ECO&q=" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#hasDrug1", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "provide the drugs used by this target group from Translator NameResolution API" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "https://name-resolution-sri.renci.org/lookup?limit=10&string=" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#hasDrug2", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "provide the drugs used by this target group from Translator NameResolution API" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "https://name-resolution-sri.renci.org/lookup?limit=10&string=" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#hasPhenotype", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "provide a URI for the phenotype of the target group from Translator NameResolution API" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "https://name-resolution-sri.renci.org/lookup?limit=10&string=" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#lifeStage", "@type" : [ "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "The target group life stage" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#lifeStageName", "@type" : [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "describe the life stage or age of the target group (e.g. Adults, 18-40)" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#negated", "@type" : [ "https://w3id.org/np/o/ntemplate/RestrictedChoicePlaceholder" ], "https://w3id.org/np/o/ntemplate/possibleValue" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#false" }, { "@id" : "http://www.w3.org/2001/XMLSchema#true" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#object", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "target biomedical entity from Translator NameResolution API" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "https://name-resolution-sri.renci.org/lookup?limit=10&string=" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#objectType", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "search for the object class in the BioLink model" } ], "https://w3id.org/np/o/ntemplate/possibleValue" : [ { "@id" : "https://w3id.org/biolink/vocab/ChemicalSubstance" }, { "@id" : "https://w3id.org/biolink/vocab/Disease" }, { "@id" : "https://w3id.org/biolink/vocab/Drug" }, { "@id" : "https://w3id.org/biolink/vocab/Gene" }, { "@id" : "https://w3id.org/biolink/vocab/PhenotypicFeature" }, { "@id" : "https://w3id.org/biolink/vocab/Protein" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "http://data.bioontology.org/search?pagesize=20&apikey=fd451bec-eacd-4519-b972-90fb6c7007cb&ontologies=BLM&include_properties=true&q=" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#providedBy", "@type" : [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "add the identifier of the dataset or agent providing the associations" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#publication", "@type" : [ "https://w3id.org/np/o/ntemplate/UriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "add the URI of a publication supporting this association (doi, PubMed, URL...)" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#readableassertion", "@type" : [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "describe the assertion concisely (e.g. tylenol treats pain in adults patients)" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st00", "@type" : [ "http://www.w3.org/1999/02/22-rdf-syntax-ns#Statement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#readableassertion" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "http://www.w3.org/2000/01/rdf-schema#label" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#association" } ], "https://w3id.org/np/o/ntemplate/statementOrder" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#integer", "@value" : "0" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st01", "@type" : [ "http://www.w3.org/1999/02/22-rdf-syntax-ns#Statement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#subject" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#association" } ], "https://w3id.org/np/o/ntemplate/statementOrder" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#integer", "@value" : "1" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st02", "@type" : [ "http://www.w3.org/1999/02/22-rdf-syntax-ns#Statement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#subjectType" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/biolink/vocab/category" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#subject" } ], "https://w3id.org/np/o/ntemplate/statementOrder" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#integer", "@value" : "2" } ] }, { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#st03", "@type" : [ "http://www.w3.org/1999/02/22-rdf-syntax-ns#Statement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAzTbKefd-Enr0NWnz0-EW_ZZ6Gudgcp8RcfkkLlJdA2A#object" } ], 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